RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 VPS53Q5VIR6 699 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 C1orf53Q5VUE5 145 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 FAM109BQ6ICB4 259 aaPredicted RBP10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 CCDC174Q6PII3 467 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 MAMDC4Q6UXC1 1216 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 KCTD1Q719H9 257 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 NOL8Q76FK4 1167 aaKnown RBP10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 ARMCX2Q7L311 632 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 CCDC144CPQ8IYA2 1237 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 GMCL1P1Q8NEA9 526 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 KLHDC9Q8NEP7 349 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 RNPC3Q96LT9 517 aaKnown RBP10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 CDX2Q99626 313 aaPredicted RBP10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 SEMA6BQ9H3T3 888 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 STX8Q9UNK0 236 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 TTC41PQ6P2S7 1318 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 SYNGAP1Q96PV0 1343 aa10.23□□□□□ -0.77
CTDNEP1-203ENST00000570385 TSPY2A6NKD2 308 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 DCDC2CA8MYV0 355 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 KIAA0355O15063 1070 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 FOXP2O15409 715 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 DUSP11O75319 330 aaKnown RBP10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 ALAS1P13196 640 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 SLC1A4P43007 532 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 BEX3Q00994 111 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 GNASQ5JWF2 1037 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 CCSAPQ6IQ19 270 aaPredicted RBP10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 MSL3Q8N5Y2 521 aaKnown RBP10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 CHST13Q8NET6 341 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 NUP133Q8WUM0 1156 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 MYLIPQ8WY64 445 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 TTYH1Q9H313 450 aaPredicted RBP10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 RNF146Q9NTX7 359 aa10.22□□□□□ -0.77
CTDNEP1-203ENST00000570385 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 SOWAHBA6NEL2 793 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 RANBP6O60518 1105 aaKnown RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 ASGR1P07306 291 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 STAT2P52630 851 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 FPGSQ05932 587 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 EEPD1Q7L9B9 569 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 ZNF467Q7Z7K2 595 aaPredicted RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 STAG1Q8WVM7 1258 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 GLT1D1Q96MS3 346 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 TRERF1Q96PN7 1200 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 PURBQ96QR8 312 aaKnown RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 CRBNQ96SW2 442 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 TSEN34Q9BSV6 310 aaKnown RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 ABHD16BQ9H3Z7 469 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 ACAD9Q9H845 621 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 A1CFQ9NQ94 594 aaKnown RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 IL17RBQ9NRM6 502 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 TOMM22Q9NS69 142 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 ZBTB47Q9UFB7 747 aaPredicted RBP10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 FBXO40Q9UH90 709 aa10.21□□□□□ -0.77
CTDNEP1-203ENST00000570385 ZNF536O15090 1300 aa10.21□□□□□ -0.78
CTDNEP1-203ENST00000570385 MOXD2PA6NHM9 499 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 ACRP10323 421 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 LAMA2P24043 3122 aaKnown RBP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 SLC16A2P36021 539 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 OAZ1P54368 228 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 SMAD3P84022 425 aaKnown RBP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 CCDC96Q2M329 555 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 MUM1L1Q5H9M0 696 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 RRP12Q5JTH9 1297 aaKnown RBP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 TMEM63BQ5T3F8 832 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 TTBK2Q6IQ55 1244 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 RCSD1Q6JBY9 416 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 CXCL17Q6UXB2 119 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 ANKRD33Q7Z3H0 272 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 FAM160B2Q86V87 743 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 FAM133AQ8N9E0 248 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 PCSK9Q8NBP7 692 aaKnown RBP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 MAFAQ8NHW3 353 aaPredicted RBP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 CHURC1Q8WUH1 139 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 GMCL1Q96IK5 515 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 PLIN4Q96Q06 1357 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 COL25A1Q9BXS0 654 aaPredicted RBP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 PPP1R12CQ9BZL4 782 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 KATNBL1Q9H079 304 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 SPC25Q9HBM1 224 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 PDGFCQ9NRA1 345 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 PRR12Q9ULL5 1215 aa10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.2□□□□□ -0.78
CTDNEP1-203ENST00000570385 ASTN1O14525 1302 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 ELP1O95163 1332 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 FRMPD2Q68DX3 1309 aaPredicted RBP10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 ARVCFO00192 962 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 CTAGE5O15320 804 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 DYNC1LI2O43237 492 aaPredicted RBP10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 TIMP1P01033 207 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 CDK7P50613 346 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 RRP1P56182 461 aaKnown RBP10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 GJA9P57773 515 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 TNFAIP2Q03169 654 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 NSMFQ6X4W1 530 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 FBXO16Q8IX29 292 aaPredicted RBP10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 FAM227BQ96M60 508 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 TOX2Q96NM4 488 aa10.19□□□□□ -0.78
CTDNEP1-203ENST00000570385 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.19□□□□□ -0.781e-6■■■□□ 17.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms