RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 AKR1A1P14550 325 aa26.51■■□□□ 1.83
CLN3-215ENST00000565236 CCDC96Q2M329 555 aa26.51■■□□□ 1.83
CLN3-215ENST00000565236 ZNF467Q7Z7K2 595 aaPredicted RBP26.51■■□□□ 1.83
CLN3-215ENST00000565236 DCAF4Q8WV16 495 aa26.51■■□□□ 1.83
CLN3-215ENST00000565236 AGBL1Q96MI9 1066 aa26.51■■□□□ 1.83
CLN3-215ENST00000565236 RNF41Q9H4P4 317 aaPredicted RBP26.51■■□□□ 1.83
CLN3-215ENST00000565236 ACAD9Q9H845 621 aa26.51■■□□□ 1.83
CLN3-215ENST00000565236 ZNF213O14771 459 aa26.5■■□□□ 1.83
CLN3-215ENST00000565236 SNAI1O95863 264 aaPredicted RBP26.5■■□□□ 1.83
CLN3-215ENST00000565236 ADCYAP1R1P41586 468 aa26.5■■□□□ 1.83
CLN3-215ENST00000565236 TKFCQ3LXA3 575 aa26.5■■□□□ 1.83
CLN3-215ENST00000565236 SLC39A5Q6ZMH5 540 aa26.5■■□□□ 1.83
CLN3-215ENST00000565236 TMEM47Q9BQJ4 181 aa26.5■■□□□ 1.83
CLN3-215ENST00000565236 PRR12Q9ULL5 1215 aa26.5■■□□□ 1.83
CLN3-215ENST00000565236 ZNF536O15090 1300 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 RTP1P59025 263 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 SNAP25P60880 206 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 CCDC174Q6PII3 467 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 RNF180Q86T96 592 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 FERMT2Q96AC1 680 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 RNF146Q9NTX7 359 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 FAM184BQ9ULE4 1060 aa26.49■■□□□ 1.83
CLN3-215ENST00000565236 PGK1P00558 417 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 ALAS1P13196 640 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 RASGRP2Q7LDG7 609 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 TBC1D10CQ8IV04 446 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 TTC14Q96N46 770 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 TRERF1Q96PN7 1200 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 ZHX1Q9UKY1 873 aaPredicted RBP26.48■■□□□ 1.83
CLN3-215ENST00000565236 ATP11BQ9Y2G3 1177 aa26.48■■□□□ 1.83
CLN3-215ENST00000565236 POTEB2H3BUK9 544 aa26.47■■□□□ 1.83
CLN3-215ENST00000565236 IRX6P78412 446 aaPredicted RBP26.47■■□□□ 1.83
CLN3-215ENST00000565236 ESR2Q92731 530 aa26.47■■□□□ 1.83
CLN3-215ENST00000565236 UBE2OQ9C0C9 1292 aaKnown RBP26.47■■□□□ 1.83
CLN3-215ENST00000565236 CDKN2AIPQ9NXV6 580 aaPredicted RBP26.47■■□□□ 1.83
CLN3-215ENST00000565236 PRKAG2Q9UGJ0 569 aa26.47■■□□□ 1.83
CLN3-215ENST00000565236 ACVR2BQ13705 512 aa26.46■■□□□ 1.83
CLN3-215ENST00000565236 TTBK2Q6IQ55 1244 aa26.46■■□□□ 1.83
CLN3-215ENST00000565236 LBHD1Q9BQE6 289 aaPredicted RBP26.46■■□□□ 1.83
CLN3-215ENST00000565236 ABHD16BQ9H3Z7 469 aa26.46■■□□□ 1.83
CLN3-215ENST00000565236 SZT2Q5T011 3432 aa26.46■■□□□ 1.83
CLN3-215ENST00000565236 SLC16A2P36021 539 aa26.45■■□□□ 1.82
CLN3-215ENST00000565236 MDM2Q00987 491 aaPredicted RBP26.45■■□□□ 1.82
CLN3-215ENST00000565236 CNTN2Q02246 1040 aa26.45■■□□□ 1.82
CLN3-215ENST00000565236 LENG1Q96BZ8 264 aaPredicted RBP26.45■■□□□ 1.82
CLN3-215ENST00000565236 FGD4Q96M96 766 aa26.45■■□□□ 1.82
CLN3-215ENST00000565236 GPCPD1Q9NPB8 672 aa26.45■■□□□ 1.82
CLN3-215ENST00000565236 A1CFQ9NQ94 594 aaKnown RBP26.45■■□□□ 1.82
CLN3-215ENST00000565236 CCPG1Q9ULG6 757 aa26.45■■□□□ 1.82
CLN3-215ENST00000565236 PHF24Q9UPV7 400 aa26.45■■□□□ 1.82
CLN3-215ENST00000565236 BTNL9Q6UXG8 535 aa26.44■■□□□ 1.82
CLN3-215ENST00000565236 ARMCX2Q7L311 632 aa26.44■■□□□ 1.82
CLN3-215ENST00000565236 FAM133AQ8N9E0 248 aa26.44■■□□□ 1.82
CLN3-215ENST00000565236 DSCC1Q9BVC3 393 aa26.44■■□□□ 1.82
CLN3-215ENST00000565236 FRMPD2Q68DX3 1309 aaPredicted RBP26.43■■□□□ 1.82
CLN3-215ENST00000565236 ICAM1P05362 532 aa26.43■■□□□ 1.82
CLN3-215ENST00000565236 PDE4AP27815 886 aa26.43■■□□□ 1.82
CLN3-215ENST00000565236 SYDE2Q5VT97 1194 aa26.43■■□□□ 1.82
CLN3-215ENST00000565236 CCDC144CPQ8IYA2 1237 aa26.43■■□□□ 1.82
CLN3-215ENST00000565236 TDHQ8IZJ6 230 aa26.43■■□□□ 1.82
CLN3-215ENST00000565236 CTNNA3Q9UI47 895 aa26.43■■□□□ 1.82
CLN3-215ENST00000565236 NEDD4P46934 1319 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 DUSP11O75319 330 aaKnown RBP26.42■■□□□ 1.82
CLN3-215ENST00000565236 PDHBP11177 359 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 NT5C2P49902 561 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 SNX17Q15036 470 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 IMMTQ16891 758 aaKnown RBP26.42■■□□□ 1.82
CLN3-215ENST00000565236 TRIM60Q495X7 471 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 MUM1L1Q5H9M0 696 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 C1orf53Q5VUE5 145 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 ZKSCAN3Q9BRR0 538 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 TSEN34Q9BSV6 310 aaKnown RBP26.42■■□□□ 1.82
CLN3-215ENST00000565236 RANBP17Q9H2T7 1088 aaKnown RBP26.42■■□□□ 1.82
CLN3-215ENST00000565236 MCM3APO60318 1980 aa26.42■■□□□ 1.82
CLN3-215ENST00000565236 ASB14A6NK59 587 aa26.41■■□□□ 1.82
CLN3-215ENST00000565236 SOX1O00570 391 aaPredicted RBP26.41■■□□□ 1.82
CLN3-215ENST00000565236 ADAMTS4O75173 837 aa26.41■■□□□ 1.82
CLN3-215ENST00000565236 CCDC144BQ3MJ40 725 aa26.41■■□□□ 1.82
CLN3-215ENST00000565236 CCDC178Q5BJE1 867 aa26.41■■□□□ 1.82
CLN3-215ENST00000565236 TTC22Q5TAA0 569 aa26.41■■□□□ 1.82
CLN3-215ENST00000565236 IQCA1Q86XH1 822 aa26.41■■□□□ 1.82
CLN3-215ENST00000565236 SYNRGQ9UMZ2 1314 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 LAMA3Q16787 3333 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 SOWAHBA6NEL2 793 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 KDM4AO75164 1064 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 NSMFQ6X4W1 530 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 DGKHQ86XP1 1220 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 LRCH3Q96II8 777 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 SPC25Q9HBM1 224 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 PRDM5Q9NQX1 630 aaPredicted RBP26.4■■□□□ 1.82
CLN3-215ENST00000565236 CYP39A1Q9NYL5 469 aa26.4■■□□□ 1.82
CLN3-215ENST00000565236 A0A1W2PQ45 241 aaPredicted RBP26.39■■□□□ 1.82
CLN3-215ENST00000565236 A0A1W2PQY0 241 aa26.39■■□□□ 1.82
CLN3-215ENST00000565236 ZNF543Q08ER8 600 aa26.39■■□□□ 1.82
CLN3-215ENST00000565236 SNHG28P0DPA3 235 aa26.38■■□□□ 1.81
CLN3-215ENST00000565236 ACLYP53396 1101 aa26.38■■□□□ 1.81
CLN3-215ENST00000565236 TLE2Q04725 743 aa26.38■■□□□ 1.81
CLN3-215ENST00000565236 KCNA10Q16322 511 aa26.38■■□□□ 1.81
CLN3-215ENST00000565236 KLHDC9Q8NEP7 349 aa26.38■■□□□ 1.81
CLN3-215ENST00000565236 NUP133Q8WUM0 1156 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms