RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HSPA1BP0DMV9 641 aaKnown RBP23.88■■□□□ 1.41
CLN3-212ENST00000564574 OAZ1P54368 228 aa23.88■■□□□ 1.41
CLN3-212ENST00000564574 CDC37Q16543 378 aaPredicted RBP23.88■■□□□ 1.41
CLN3-212ENST00000564574 SAMD1Q6SPF0 538 aaPredicted RBP23.88■■□□□ 1.41
CLN3-212ENST00000564574 PHKBQ93100 1093 aa23.88■■□□□ 1.41
CLN3-212ENST00000564574 PIGSQ96S52 555 aa23.88■■□□□ 1.41
CLN3-212ENST00000564574 V9GY48 417 aaPredicted RBP23.88■■□□□ 1.41
CLN3-212ENST00000564574 PNMA6FA0A0J9YX94 578 aa23.87■■□□□ 1.41
CLN3-212ENST00000564574 hCG_1984214I3L0E3 225 aa23.87■■□□□ 1.41
CLN3-212ENST00000564574 DEXIO95424 95 aa23.87■■□□□ 1.41
CLN3-212ENST00000564574 GCLCP48506 637 aaPredicted RBP23.87■■□□□ 1.41
CLN3-212ENST00000564574 TRAF1Q13077 416 aa23.87■■□□□ 1.41
CLN3-212ENST00000564574 TAF1CQ15572 869 aaPredicted RBP23.87■■□□□ 1.41
CLN3-212ENST00000564574 ZNF713Q8N859 430 aaPredicted RBP23.87■■□□□ 1.41
CLN3-212ENST00000564574 SMCR8Q8TEV9 937 aaPredicted RBP23.87■■□□□ 1.41
CLN3-212ENST00000564574 WASF1Q92558 559 aa23.87■■□□□ 1.41
CLN3-212ENST00000564574 ATP2A1O14983 1001 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 HSP90AA1P07900 732 aaKnown RBP23.86■■□□□ 1.41
CLN3-212ENST00000564574 CYP2C8P10632 490 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 QRICH1Q2TAL8 776 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 COL13A1Q5TAT6 717 aaPredicted RBP23.86■■□□□ 1.41
CLN3-212ENST00000564574 HOMER1Q86YM7 354 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 REPS2Q8NFH8 660 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 ORC3Q9UBD5 711 aaPredicted RBP23.86■■□□□ 1.41
CLN3-212ENST00000564574 SMC3Q9UQE7 1217 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 RABGAP1Q9Y3P9 1069 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 KIF3AQ9Y496 699 aa23.86■■□□□ 1.41
CLN3-212ENST00000564574 JAK2O60674 1132 aa23.85■■□□□ 1.41
CLN3-212ENST00000564574 PFKFB3Q16875 520 aaPredicted RBP23.85■■□□□ 1.41
CLN3-212ENST00000564574 ZFYVE28Q9HCC9 887 aa23.85■■□□□ 1.41
CLN3-212ENST00000564574 ICAM1P05362 532 aa23.84■■□□□ 1.41
CLN3-212ENST00000564574 SCG2P13521 617 aa23.84■■□□□ 1.41
CLN3-212ENST00000564574 AMNQ9BXJ7 453 aa23.84■■□□□ 1.41
CLN3-212ENST00000564574 ADGRA2Q96PE1 1338 aa23.84■■□□□ 1.41
CLN3-212ENST00000564574 CA12O43570 354 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 FDPSP14324 419 aaKnown RBP23.83■■□□□ 1.41
CLN3-212ENST00000564574 PKN1Q16512 942 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 CCDC174Q6PII3 467 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 FBXO11Q86XK2 927 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 FAM184AQ8NB25 1140 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 PIBF1Q8WXW3 757 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 DDX11Q96FC9 970 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 PCNTO95613 3336 aa23.83■■□□□ 1.41
CLN3-212ENST00000564574 ZNF536O15090 1300 aa23.83■■□□□ 1.4
CLN3-212ENST00000564574 hCG_1642624A0A1W2PR95 340 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 GJB2P29033 226 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 SNAP25P60880 206 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 TMEM132BQ14DG7 1078 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 FAM177A1Q8N128 213 aaPredicted RBP23.82■■□□□ 1.4
CLN3-212ENST00000564574 CFHR5Q9BXR6 569 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 TEX13BQ9BXU2 312 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 RBPJLQ9UBG7 517 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 MORF4L1Q9UBU8 362 aa23.82■■□□□ 1.4
CLN3-212ENST00000564574 DAXXQ9UER7 740 aaPredicted RBP23.82■■□□□ 1.4
CLN3-212ENST00000564574 ZNF214Q9UL59 606 aaPredicted RBP23.82■■□□□ 1.4
CLN3-212ENST00000564574 TLR2O60603 784 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 PPFIA3O75145 1194 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 CNMDO75829 334 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 COPB2P35606 906 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 TKFCQ3LXA3 575 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 POTEEQ6S8J3 1075 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 PAGR1Q9BTK6 254 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 RAVER2Q9HCJ3 691 aaKnown RBP23.81■■□□□ 1.4
CLN3-212ENST00000564574 BTBD7Q9P203 1132 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 CCPG1Q9ULG6 757 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 ABCB11O95342 1321 aa23.81■■□□□ 1.4
CLN3-212ENST00000564574 XBP1P17861 261 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 STAT3P40763 770 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 FAM110CQ1W6H9 321 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 PPP1R18Q6NYC8 613 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 CPXCR1Q8N123 301 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 CCDC12Q8WUD4 166 aaPredicted RBP23.8■■□□□ 1.4
CLN3-212ENST00000564574 ALG1Q9BT22 464 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 SPATC1LQ9H0A9 340 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 SH3GLB2Q9NR46 395 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 BARHL2Q9NY43 387 aa23.8■■□□□ 1.4
CLN3-212ENST00000564574 RBBP6Q7Z6E9 1792 aaKnown RBP23.8■■□□□ 1.4
CLN3-212ENST00000564574 SMCHD1A6NHR9 2005 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 PPP1R11O60927 126 aaPredicted RBP23.79■■□□□ 1.4
CLN3-212ENST00000564574 ERVK-9P63128 1117 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 ERVK-24P63145 666 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 CRHR2Q13324 411 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 WWC2Q6AWC2 1192 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 SNRNP48Q6IEG0 339 aaKnown RBP23.79■■□□□ 1.4
CLN3-212ENST00000564574 HEATR3Q7Z4Q2 680 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 RIOX2Q8IUF8 465 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 RGS22Q8NE09 1264 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 GPRC5AQ8NFJ5 357 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 CCDC148Q8NFR7 591 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 AGBL1Q96MI9 1066 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 TXNRD2Q9NNW7 524 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 PCDHA1Q9Y5I3 950 aa23.79■■□□□ 1.4
CLN3-212ENST00000564574 SLC25A27O95847 323 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 BCRP11274 1271 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 CCNA1P78396 465 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 MAP2K1Q02750 393 aaPredicted RBP23.78■■□□□ 1.4
CLN3-212ENST00000564574 PLS1Q14651 629 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 C17orf99Q6UX52 265 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 ANKRD13CQ8N6S4 541 aa23.78■■□□□ 1.4
CLN3-212ENST00000564574 GPKOWQ92917 476 aaPredicted RBP eCLIP23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms