RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 RTEL1Q9NZ71 1219 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 TMOD4Q9NZQ9 345 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 PPP1R9AQ9ULJ8 1098 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 CNPY2Q9Y2B0 182 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 RLFQ13129 1914 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 A0A0G2JLL6 359 aaPredicted RBP15.98■□□□□ 0.15
CLK3-209ENST00000562670 A0A0G2JMZ2 1700 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 TRAF5O00463 557 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 HMGCS2P54868 508 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 NR5A1Q13285 461 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 TTLL12Q14166 644 aaPredicted RBP15.98■□□□□ 0.15
CLK3-209ENST00000562670 MCTP2Q6DN12 878 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 FAM173BQ6P4H8 233 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 PRRT2Q7Z6L0 340 aaPredicted RBP15.98■□□□□ 0.15
CLK3-209ENST00000562670 FBXO11Q86XK2 927 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 OXER1Q8TDS5 423 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 TRPM7Q96QT4 1865 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 RPAP3Q9H6T3 665 aaPredicted RBP15.98■□□□□ 0.15
CLK3-209ENST00000562670 RIC8AQ9NPQ8 531 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 LMBRD1Q9NUN5 540 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 TCHHQ07283 1943 aa15.98■□□□□ 0.15
CLK3-209ENST00000562670 SMCO2A6NFE2 343 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 FIBPO43427 364 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 ADCY7P51828 1080 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 KRT25Q7Z3Z0 450 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 LEO1Q8WVC0 666 aaPredicted RBP15.97■□□□□ 0.15
CLK3-209ENST00000562670 CUL5Q93034 780 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 USP28Q96RU2 1077 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 ELP3Q9H9T3 547 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 SLC38A10Q9HBR0 1119 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 GBA2Q9HCG7 927 aaPredicted RBP15.97■□□□□ 0.15
CLK3-209ENST00000562670 RCOR1Q9UKL0 485 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 NOL7Q9UMY1 257 aaKnown RBP15.97■□□□□ 0.15
CLK3-209ENST00000562670 PCDHA1Q9Y5I3 950 aa15.97■□□□□ 0.15
CLK3-209ENST00000562670 ITGBL1O95965 494 aaPredicted RBP15.96■□□□□ 0.15
CLK3-209ENST00000562670 BMP15O95972 392 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 NCLP19338 710 aaKnown RBP15.96■□□□□ 0.15
CLK3-209ENST00000562670 CLK2P49760 499 aaKnown RBP15.96■□□□□ 0.15
CLK3-209ENST00000562670 MRPL12P52815 198 aaKnown RBP15.96■□□□□ 0.15
CLK3-209ENST00000562670 OAZ1P54368 228 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 SKOR2Q2VWA4 1001 aaPredicted RBP15.96■□□□□ 0.15
CLK3-209ENST00000562670 ANO1Q5XXA6 986 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 REXO1Q8N1G1 1221 aaKnown RBP15.96■□□□□ 0.15
CLK3-209ENST00000562670 KCNG4Q8TDN1 519 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 KIFC2Q96AC6 838 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 COA7Q96BR5 231 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 CHAMP1Q96JM3 812 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 CLMNQ96JQ2 1002 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 SPATA32Q96LK8 384 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 TANGO6Q9C0B7 1094 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 FBXO28Q9NVF7 368 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 ADAMTS5Q9UNA0 930 aa15.96■□□□□ 0.15
CLK3-209ENST00000562670 ABCB11O95342 1321 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L15C9J2P7 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L13C9JLJ4 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L11C9JVI0 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L18D6R9N7 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L22D6RA61 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L17D6RBQ6 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L19D6RCP7 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L20D6RJB6 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 PIK3CDO00329 1044 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 IRF6O14896 467 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 FLOT1O75955 427 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 MBD3O95983 291 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 ICAM1P05362 532 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 HOXA7P31268 230 aaPredicted RBP15.95■□□□□ 0.14
CLK3-209ENST00000562670 UBE2HP62256 183 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 GHRHRQ02643 423 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 USP17L24Q0WX57 530 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 ORC2Q13416 577 aaPredicted RBP15.95■□□□□ 0.14
CLK3-209ENST00000562670 FOXD4L6Q3SYB3 417 aaPredicted RBP15.95■□□□□ 0.14
CLK3-209ENST00000562670 FOXD4L3Q6VB84 417 aaPredicted RBP15.95■□□□□ 0.14
CLK3-209ENST00000562670 CATSPERGQ6ZRH7 1159 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 MOB2Q70IA6 237 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 C2orf69Q8N8R5 385 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 LINC00301Q8NCQ3 95 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 OPTNQ96CV9 577 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 OTUD5Q96G74 571 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 MAF1Q9H063 256 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 PCDHA6Q9UN73 950 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 PCDHA8Q9Y5H6 950 aa15.95■□□□□ 0.14
CLK3-209ENST00000562670 RBBP6Q7Z6E9 1792 aaKnown RBP15.95■□□□□ 0.14
CLK3-209ENST00000562670 CCDC194A0A1B0GVG4 234 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 ATP2A1O14983 1001 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 CELF2O95319 508 aaKnown RBP15.94■□□□□ 0.14
CLK3-209ENST00000562670 TOB1P50616 345 aaPredicted RBP15.94■□□□□ 0.14
CLK3-209ENST00000562670 AP3B2Q13367 1082 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 LBX2Q6XYB7 198 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 SAMD3Q8N6K7 520 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 PSTPIP2Q9H939 334 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.94■□□□□ 0.14
CLK3-209ENST00000562670 CEP131Q9UPN4 1083 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 ZNF536O15090 1300 aa15.94■□□□□ 0.14
CLK3-209ENST00000562670 VWA5AO00534 786 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 PPP6R2O75170 966 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 PRPF40AO75400 957 aaKnown RBP15.93■□□□□ 0.14
CLK3-209ENST00000562670 DSG3P32926 999 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 DGKZQ13574 1117 aa15.93■□□□□ 0.14
CLK3-209ENST00000562670 COG2Q14746 738 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms