RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 PDE6BP35913 854 aa7.13□□□□□ -1.27
VPS13C-210ENST00000561258 CASP7P55210 303 aa7.13□□□□□ -1.27
VPS13C-210ENST00000561258 NR0B2Q15466 257 aa7.13□□□□□ -1.27
VPS13C-210ENST00000561258 RNF187Q5TA31 235 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-210ENST00000561258 DIEXFQ68CQ4 756 aaKnown RBP7.13□□□□□ -1.27
VPS13C-210ENST00000561258 ZNF552Q9H707 407 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-210ENST00000561258 CWC22Q9HCG8 908 aaKnown RBP7.13□□□□□ -1.27
VPS13C-210ENST00000561258 GCM1Q9NP62 436 aa7.13□□□□□ -1.27
VPS13C-210ENST00000561258 ST7Q9NRC1 585 aa7.13□□□□□ -1.27
VPS13C-210ENST00000561258 GPR160Q9UJ42 338 aa7.13□□□□□ -1.27
VPS13C-210ENST00000561258 CNOT6Q9ULM6 557 aaKnown RBP7.13□□□□□ -1.27
VPS13C-210ENST00000561258 POLR3KQ9Y2Y1 108 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-210ENST00000561258 CECR2Q9BXF3 1484 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 SHISA3A0PJX4 238 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 PDPK1O15530 556 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 PSPNO60542 156 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 SEMA7AO75326 666 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 CDC45O75419 566 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 ATE1O95260 518 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 C19orf47Q8N9M1 422 aaKnown RBP7.12□□□□□ -1.27
VPS13C-210ENST00000561258 MICAL1Q8TDZ2 1067 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 RNF141Q8WVD5 230 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 RELTQ969Z4 430 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 SHISA4Q96DD7 197 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 ZCCHC4Q9H5U6 513 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 FANCLQ9NW38 375 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 PCDHB14Q9Y5E9 798 aa7.12□□□□□ -1.27
VPS13C-210ENST00000561258 hCG_2014768A0A024R1R8 64 aa7.11□□□□□ -1.27
VPS13C-210ENST00000561258 A0A0G2JLL6 359 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-210ENST00000561258 TEX51A0A1B0GUA7 166 aa7.11□□□□□ -1.27
VPS13C-210ENST00000561258 CHMP4BP1P59074 171 aa7.11□□□□□ -1.27
VPS13C-210ENST00000561258 TEKQ02763 1124 aa7.11□□□□□ -1.27
VPS13C-210ENST00000561258 IFRD2Q12894 506 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-210ENST00000561258 FXNQ16595 210 aa7.11□□□□□ -1.27
VPS13C-210ENST00000561258 SYTL4Q96C24 671 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-210ENST00000561258 ESYT3A0FGR9 886 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 EFEMP2O95967 443 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 IGBP1P78318 339 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 LARP1BQ659C4 914 aaKnown RBP7.1□□□□□ -1.27
VPS13C-210ENST00000561258 FILIP1Q7Z7B0 1213 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 SPPL2CQ8IUH8 684 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 SIRT2Q8IXJ6 389 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 APPBP2Q92624 585 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 IFT57Q9NWB7 429 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 TMEM260Q9NX78 707 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 NOP58Q9Y2X3 529 aaKnown RBP7.1□□□□□ -1.27
VPS13C-210ENST00000561258 KCTD3Q9Y597 815 aa7.1□□□□□ -1.27
VPS13C-210ENST00000561258 PRR36Q9H6K5 1346 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 MEIS3P2A8K0S8 358 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 GRIN3BO60391 1043 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 GJB6O95452 261 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 YARSP54577 528 aaKnown RBP7.09□□□□□ -1.27
VPS13C-210ENST00000561258 CHRNEQ04844 493 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 SSPNQ14714 243 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 TMEM201Q5SNT2 666 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 RUFY4Q6ZNE9 571 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 KIAA0907Q7Z7F0 614 aaPredicted RBP7.09□□□□□ -1.27
VPS13C-210ENST00000561258 JMYQ8N9B5 988 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 ZCRB1Q8TBF4 217 aaKnown RBP7.09□□□□□ -1.27
VPS13C-210ENST00000561258 KREMEN1Q96MU8 473 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 KCNC2Q96PR1 638 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 PRKAB1Q9Y478 270 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 COL4A3BPQ9Y5P4 624 aa7.09□□□□□ -1.27
VPS13C-210ENST00000561258 NOTOA8MTQ0 251 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 CHURC1-FNTBB4DL54 471 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 FOXD2O60548 495 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-210ENST00000561258 DNAJC6O75061 913 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 RAB11FIP3O75154 756 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 IBSPP21815 317 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-210ENST00000561258 DUSP4Q13115 394 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 SQSTM1Q13501 440 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 SNX17Q15036 470 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 HOMER1Q86YM7 354 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 ANKS4BQ8N8V4 417 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 LINC01599Q8WXQ3 324 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 G6PC3Q9BUM1 346 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 ANTXR1Q9H6X2 564 aa7.08□□□□□ -1.28
VPS13C-210ENST00000561258 A0A1W2PQH9 124 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 B2RBV5 119 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 TRIM13O60858 407 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 PPP2R5EQ16537 467 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 MTERF2Q49AM1 385 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 ZNF385BQ569K4 471 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 C2orf27AQ580R0 203 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 ARSHQ5FYA8 562 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 TCERG1LQ5VWI1 586 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 SLFN12Q8IYM2 578 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 MARCH10Q8NA82 808 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-210ENST00000561258 PANK1Q8TE04 598 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 SPC25Q9HBM1 224 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 PCDH12Q9NPG4 1184 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 REV1Q9UBZ9 1251 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 KLHL3Q9UH77 587 aa7.07□□□□□ -1.28
VPS13C-210ENST00000561258 HTR3BO95264 441 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 GUCY2CP25092 1073 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 CLEC16AQ2KHT3 1053 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 LRRFIP1Q32MZ4 808 aaKnown RBP7.06□□□□□ -1.28
VPS13C-210ENST00000561258 ADGRF1Q5T601 910 aa7.06□□□□□ -1.28
VPS13C-210ENST00000561258 TAB3Q8N5C8 712 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-210ENST00000561258 THAP3Q8WTV1 239 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms