RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 KLRC3Q07444 240 aa12.74□□□□□ -0.37
TPM1-227ENST00000560970 NMIQ13287 307 aaPredicted RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 LRRFIP1Q32MZ4 808 aaKnown RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 MAMDC4Q6UXC1 1216 aa12.74□□□□□ -0.37
TPM1-227ENST00000560970 CENPQQ7L2Z9 268 aaPredicted RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 ANKRD33Q7Z3H0 272 aa12.74□□□□□ -0.37
TPM1-227ENST00000560970 ZNF589Q86UQ0 364 aaPredicted RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 STK11IPQ8N1F8 1099 aa12.74□□□□□ -0.37
TPM1-227ENST00000560970 LRRC47Q8N1G4 583 aaKnown RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 PRPF38AQ8NAV1 312 aaKnown RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 MAFAQ8NHW3 353 aaPredicted RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 NUP133Q8WUM0 1156 aa12.74□□□□□ -0.37
TPM1-227ENST00000560970 DDX11Q96FC9 970 aa12.74□□□□□ -0.37
TPM1-227ENST00000560970 CDX2Q99626 313 aaPredicted RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 COL25A1Q9BXS0 654 aaPredicted RBP12.74□□□□□ -0.37
TPM1-227ENST00000560970 OAZ1P54368 228 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 VPS53Q5VIR6 699 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 GMCL1P1Q8NEA9 526 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 KIFC2Q96AC6 838 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 CEP95Q96GE4 821 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 TTYH1Q9H313 450 aaPredicted RBP12.73□□□□□ -0.37
TPM1-227ENST00000560970 SLC38A10Q9HBR0 1119 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 FBXO40Q9UH90 709 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 FAM184BQ9ULE4 1060 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 RIPK3Q9Y572 518 aa12.73□□□□□ -0.37
TPM1-227ENST00000560970 CTDP1Q9Y5B0 961 aaPredicted RBP12.73□□□□□ -0.37
TPM1-227ENST00000560970 COL4A4P53420 1690 aaPredicted RBP12.73□□□□□ -0.37
TPM1-227ENST00000560970 MYADML2A6NDP7 307 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 ZBED4O75132 1171 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 DUSP11O75319 330 aaKnown RBP12.72□□□□□ -0.37
TPM1-227ENST00000560970 SNAI1O95863 264 aaPredicted RBP12.72□□□□□ -0.37
TPM1-227ENST00000560970 TTLL1O95922 423 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 FOSL2P15408 326 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 SDSP20132 328 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 ERICH6BQ5W0A0 696 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 CPXCR1Q8N123 301 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 KLHDC9Q8NEP7 349 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 MYLIPQ8WY64 445 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 FGD4Q96M96 766 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 GLT1D1Q96MS3 346 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 TOX2Q96NM4 488 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 HELLSQ9NRZ9 838 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 TMEM39AQ9NV64 488 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.72□□□□□ -0.37
TPM1-227ENST00000560970 FEM1BQ9UK73 627 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 TBX21Q9UL17 535 aa12.72□□□□□ -0.37
TPM1-227ENST00000560970 CHD9Q3L8U1 2897 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 KIAA1217Q5T5P2 1943 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 DCDC2CA8MYV0 355 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 PATL2C9JE40 543 aaKnown RBP12.71□□□□□ -0.37
TPM1-227ENST00000560970 ADCY6O43306 1168 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 PRDM1O75626 825 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 C6orf222P0C671 652 aaPredicted RBP12.71□□□□□ -0.37
TPM1-227ENST00000560970 STAT2P52630 851 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 EPHB4P54760 987 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 FAAP100Q0VG06 881 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 CCSAPQ6IQ19 270 aaPredicted RBP12.71□□□□□ -0.37
TPM1-227ENST00000560970 ARMCX2Q7L311 632 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 IFNL3Q8IZI9 196 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 ANKRD35Q8N283 1001 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 PCSK9Q8NBP7 692 aaKnown RBP12.71□□□□□ -0.37
TPM1-227ENST00000560970 CHST13Q8NET6 341 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 UPF3AQ9H1J1 476 aaKnown RBP12.71□□□□□ -0.37
TPM1-227ENST00000560970 IL25Q9H293 177 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 SEMA6BQ9H3T3 888 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 ABHD16BQ9H3Z7 469 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 SPC25Q9HBM1 224 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 RAVER2Q9HCJ3 691 aaKnown RBP12.71□□□□□ -0.37
TPM1-227ENST00000560970 MTMR4Q9NYA4 1195 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 CLIP2Q9UDT6 1046 aa12.71□□□□□ -0.37
TPM1-227ENST00000560970 SCN5AQ14524 2016 aa12.71□□□□□ -0.38
TPM1-227ENST00000560970 ELP1O95163 1332 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 CCDC171Q6TFL3 1326 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 APPP05067 770 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 TSPY3P0CV98 308 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 TSPY8P0CW00 308 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 DNAJB2P25686 324 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 SLC4A3P48751 1232 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 PDE4BQ07343 736 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 ACVR2BQ13705 512 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 KCNA10Q16322 511 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 MCMDC2Q4G0Z9 681 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 ZNF444Q8N0Y2 327 aaPredicted RBP12.7□□□□□ -0.38
TPM1-227ENST00000560970 MKL1Q969V6 931 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 CCDC136Q96JN2 1154 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 NACAP1Q9BZK3 213 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 ACAD9Q9H845 621 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 ISY1Q9ULR0 285 aaKnown RBP12.7□□□□□ -0.38
TPM1-227ENST00000560970 PTPRSQ13332 1948 aa12.7□□□□□ -0.38
TPM1-227ENST00000560970 SCN10AQ9Y5Y9 1956 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 A0A0U1RQG5 324 aaPredicted RBP12.69□□□□□ -0.38
TPM1-227ENST00000560970 TIMP1P01033 207 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 SLC3A2P08195 630 aaKnown RBP12.69□□□□□ -0.38
TPM1-227ENST00000560970 FDX1P10109 184 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 BMP3P12645 472 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 GJA9P57773 515 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 CCDC144BQ3MJ40 725 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 CCDC174Q6PII3 467 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 TICAM2Q86XR7 235 aa12.69□□□□□ -0.38
TPM1-227ENST00000560970 NAPBQ9H115 298 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms