RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MFAP1P55081 439 aaKnown RBP16.56■□□□□ 0.24
LDLR-213ENST00000560502 STK11IPQ8N1F8 1099 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 MKL1Q969V6 931 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 RILPL2Q969X0 211 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 TOX2Q96NM4 488 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 SLC38A10Q9HBR0 1119 aa16.56■□□□□ 0.24
LDLR-213ENST00000560502 MOXD2PA6NHM9 499 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 M0R2C6 588 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 ZFYP08048 801 aaPredicted RBP16.55■□□□□ 0.24
LDLR-213ENST00000560502 GNAT2P19087 354 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 CST5P28325 142 aaPredicted RBP16.55■□□□□ 0.24
LDLR-213ENST00000560502 FAAP100Q0VG06 881 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 GMCL1P1Q8NEA9 526 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 RUFY2Q8WXA3 655 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 DDX11Q96FC9 970 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 CEP95Q96GE4 821 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 C22orf23Q9BZE7 217 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 MTMR4Q9NYA4 1195 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 CLIP2Q9UDT6 1046 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 FAM184BQ9ULE4 1060 aa16.55■□□□□ 0.24
LDLR-213ENST00000560502 MYADML2A6NDP7 307 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 ADCY6O43306 1168 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 DUSP11O75319 330 aaKnown RBP16.54■□□□□ 0.24
LDLR-213ENST00000560502 RAG1P15918 1043 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 CHMLP26374 656 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 OAZ1P54368 228 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 RNPC3Q96LT9 517 aaKnown RBP16.54■□□□□ 0.24
LDLR-213ENST00000560502 UPF3AQ9H1J1 476 aaKnown RBP16.54■□□□□ 0.24
LDLR-213ENST00000560502 RAVER2Q9HCJ3 691 aaKnown RBP16.54■□□□□ 0.24
LDLR-213ENST00000560502 STARD7Q9NQZ5 370 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.54■□□□□ 0.24
LDLR-213ENST00000560502 ZHX1Q9UKY1 873 aaPredicted RBP16.54■□□□□ 0.24
LDLR-213ENST00000560502 TBX21Q9UL17 535 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 TTC28Q96AY4 2481 aa16.54■□□□□ 0.24
LDLR-213ENST00000560502 RAD50Q92878 1312 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 TMEM265A0A087WTH1 108 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 ZBED4O75132 1171 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 PRDM1O75626 825 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 TDO2P48775 406 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 FPGSQ05932 587 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 KCNA10Q16322 511 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 CPXCR1Q8N123 301 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 LRRC47Q8N1G4 583 aaKnown RBP16.53■□□□□ 0.24
LDLR-213ENST00000560502 CHST13Q8NET6 341 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 IL27Q8NEV9 243 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 MAFAQ8NHW3 353 aaPredicted RBP16.53■□□□□ 0.24
LDLR-213ENST00000560502 NUP133Q8WUM0 1156 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 KIFC2Q96AC6 838 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 ESYT1Q9BSJ8 1104 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 KATNBL1Q9H079 304 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 ZNF287Q9HBT7 754 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 TMEM39AQ9NV64 488 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 FEM1BQ9UK73 627 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 LCTP09848 1927 aa16.53■□□□□ 0.24
LDLR-213ENST00000560502 CDH23Q9H251 3354 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 ELP1O95163 1332 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 TTLL1O95922 423 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 CDK7P50613 346 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 IRX5P78411 483 aaPredicted RBP16.52■□□□□ 0.24
LDLR-213ENST00000560502 ACVR2BQ13705 512 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 IFNL3Q8IZI9 196 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 ZNF444Q8N0Y2 327 aaPredicted RBP16.52■□□□□ 0.24
LDLR-213ENST00000560502 NEDD1Q8NHV4 660 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 MYLIPQ8WY64 445 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 IPO9Q96P70 1041 aaKnown RBP16.52■□□□□ 0.24
LDLR-213ENST00000560502 ABHD16BQ9H3Z7 469 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 FBXO40Q9UH90 709 aa16.52■□□□□ 0.24
LDLR-213ENST00000560502 DCDC2CA8MYV0 355 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 PATL2C9JE40 543 aaKnown RBP16.51■□□□□ 0.23
LDLR-213ENST00000560502 CTAGE5O15320 804 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 GJA9P57773 515 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 NKX3-2P78367 333 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 LRRFIP1Q32MZ4 808 aaKnown RBP16.51■□□□□ 0.23
LDLR-213ENST00000560502 CCDC144BQ3MJ40 725 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 ARMCX2Q7L311 632 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 DIAPH3Q9NSV4 1193 aa16.51■□□□□ 0.23
LDLR-213ENST00000560502 TIMP1P01033 207 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 FDX1P10109 184 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 BMP3P12645 472 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 SLC4A3P48751 1232 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 SLFN13Q68D06 897 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 ANKRD35Q8N283 1001 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 FAM133AQ8N9E0 248 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 PCSK9Q8NBP7 692 aaKnown RBP16.5■□□□□ 0.23
LDLR-213ENST00000560502 GLT1D1Q96MS3 346 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 SEC62Q99442 399 aaKnown RBP16.5■□□□□ 0.23
LDLR-213ENST00000560502 EYSQ5T1H1 3165 aa16.5■□□□□ 0.23
LDLR-213ENST00000560502 ZNF536O15090 1300 aa16.49■□□□□ 0.23
LDLR-213ENST00000560502 MROH7Q68CQ1 1323 aa16.49■□□□□ 0.23
LDLR-213ENST00000560502 APPP05067 770 aa16.49■□□□□ 0.23
LDLR-213ENST00000560502 ASGR1P07306 291 aa16.49■□□□□ 0.23
LDLR-213ENST00000560502 C6orf222P0C671 652 aaPredicted RBP16.49■□□□□ 0.23
LDLR-213ENST00000560502 CCDC144CPQ8IYA2 1237 aa16.49■□□□□ 0.23
LDLR-213ENST00000560502 GMCL1Q96IK5 515 aa16.49■□□□□ 0.23
LDLR-213ENST00000560502 CTDP1Q9Y5B0 961 aaPredicted RBP16.49■□□□□ 0.23
LDLR-213ENST00000560502 FOXP2O15409 715 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 SGSM2O43147 1006 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 TSPY3P0CV98 308 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 TSPY8P0CW00 308 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 FOSL2P15408 326 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms