RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GNAQP50148 359 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 MAP2K5Q13163 448 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 COL9A3Q14050 684 aaPredicted RBP15.15■□□□□ 0.02
NEDD8-208ENST00000560427 SLC9C1Q4G0N8 1177 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 SYNE3Q6ZMZ3 975 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 NBPF11Q86T75 865 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 USP6NLQ92738 828 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 ARMC5Q96C12 935 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 CHMP4CQ96CF2 233 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 ABHD8Q96I13 439 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 LZTS2Q9BRK4 669 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 RAVER2Q9HCJ3 691 aaKnown RBP15.15■□□□□ 0.02
NEDD8-208ENST00000560427 ZSWIM6Q9HCJ5 1215 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 SLC5A4Q9NY91 659 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 GABRQQ9UN88 632 aa15.15■□□□□ 0.02
NEDD8-208ENST00000560427 KLRF2D3W0D1 207 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 SMARCA1P28370 1054 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 GRK4P32298 578 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 FGD1P98174 961 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 KCTD2Q14681 263 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 RUFY3Q7L099 469 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 NUP133Q8WUM0 1156 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 MMP19Q99542 508 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 AGXT2Q9BYV1 514 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 MAF1Q9H063 256 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 GPHNQ9NQX3 736 aaPredicted RBP15.14■□□□□ 0.01
NEDD8-208ENST00000560427 CCPG1Q9ULG6 757 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 CYP46A1Q9Y6A2 500 aa15.14■□□□□ 0.01
NEDD8-208ENST00000560427 ADCY3O60266 1144 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 ADORA2AP29274 412 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 TRAF1Q13077 416 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 PPP2R5BQ15173 497 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 CDC37Q16543 378 aaPredicted RBP15.13■□□□□ 0.01
NEDD8-208ENST00000560427 CCDC174Q6PII3 467 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 APOA5Q6Q788 366 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 ADGRF4Q8IZF3 695 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 LRRC2Q9BYS8 371 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 ACAD9Q9H845 621 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 RIPK3Q9Y572 518 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 PLXNB2O15031 1838 aa15.13■□□□□ 0.01
NEDD8-208ENST00000560427 NID2Q14112 1375 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 DHX16O60231 1041 aaKnown RBP15.12■□□□□ 0.01
NEDD8-208ENST00000560427 UBXN2AP68543 259 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 Q6ZUG5 572 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 STAG2Q8N3U4 1231 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 MTMR8Q96EF0 704 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 AGBL1Q96MI9 1066 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 TCEANC2Q96MN5 208 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 SPZ1Q9BXG8 430 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 UBA5Q9GZZ9 404 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 RIOX1Q9H6W3 641 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 JMJD4Q9H9V9 463 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 RNF146Q9NTX7 359 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 RBM28Q9NW13 759 aaKnown RBP15.12■□□□□ 0.01
NEDD8-208ENST00000560427 DIS3Q9Y2L1 958 aaKnown RBP15.12■□□□□ 0.01
NEDD8-208ENST00000560427 PFASO15067 1338 aa15.12■□□□□ 0.01
NEDD8-208ENST00000560427 ZBTB43O43298 467 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 SEC24BO95487 1268 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 HMGCRP04035 888 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 CYP2B6P20813 491 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 EVCP57679 992 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 OLFML2BQ68BL8 750 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 DPP9Q86TI2 863 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 MICU3Q86XE3 530 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 FANCBQ8NB91 859 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 ZNF333Q96JL9 665 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 TRERF1Q96PN7 1200 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 MYL10Q9BUA6 226 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 UPF2Q9HAU5 1272 aaKnown RBP15.11■□□□□ 0.01
NEDD8-208ENST00000560427 ABCB11O95342 1321 aa15.11■□□□□ 0.01
NEDD8-208ENST00000560427 KLF18A0A0U1RQI7 1052 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 CCDC196A0A1B0GTZ2 297 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 ZBTB5O15062 677 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 ALAS1P13196 640 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 QRICH1Q2TAL8 776 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 ANKRD35Q8N283 1001 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 MSL3Q8N5Y2 521 aaKnown RBP15.1■□□□□ 0.01
NEDD8-208ENST00000560427 TRIB2Q92519 343 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 BRF1Q92994 677 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 DDX11Q96FC9 970 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 AMNQ9BXJ7 453 aa15.1■□□□□ 0.01
NEDD8-208ENST00000560427 DNAJC25-GNG10A0A024R161 153 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 INHAP05111 366 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 CPA1P15085 419 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 ELNP15502 786 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 SLC4A3P48751 1232 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 SNAP25P60880 206 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 RTN1Q16799 776 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 TMTC3Q6ZXV5 915 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 ZNF467Q7Z7K2 595 aaPredicted RBP15.09■□□□□ 0.01
NEDD8-208ENST00000560427 FBXO11Q86XK2 927 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 RGS22Q8NE09 1264 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 SH3TC2Q8TF17 1288 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 UPF3BQ9BZI7 483 aaKnown RBP15.09■□□□□ 0.01
NEDD8-208ENST00000560427 ALDH8A1Q9H2A2 487 aaPredicted RBP15.09■□□□□ 0.01
NEDD8-208ENST00000560427 CPVLQ9H3G5 476 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 HOMER2Q9NSB8 354 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 PDRG1Q9NUG6 133 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 BRPF3Q9ULD4 1205 aa15.09■□□□□ 0.01
NEDD8-208ENST00000560427 GOLGA8AA7E2F4 631 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms