RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CPXCR1Q8N123 301 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 STAG2Q8N3U4 1231 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 COA7Q96BR5 231 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 RRP36Q96EU6 259 aaKnown RBP11.69□□□□□ -0.54
USP3-216ENST00000559873 UBA5Q9GZZ9 404 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 SLKQ9H2G2 1235 aaPredicted RBP11.69□□□□□ -0.54
USP3-216ENST00000559873 TXNRD2Q9NNW7 524 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 BTBD7Q9P203 1132 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 ZNF214Q9UL59 606 aaPredicted RBP11.69□□□□□ -0.54
USP3-216ENST00000559873 CCPG1Q9ULG6 757 aa11.69□□□□□ -0.54
USP3-216ENST00000559873 ZBTB5O15062 677 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 CNMDO75829 334 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 FMNL1O95466 1100 aaPredicted RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 PDIA3P30101 505 aaKnown RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 AKAP17AQ02040 695 aaKnown RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 NOL8Q76FK4 1167 aaKnown RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 NCAPG2Q86XI2 1143 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 HOMER1Q86YM7 354 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 CHST13Q8NET6 341 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 REPS2Q8NFH8 660 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 SOCS4Q8WXH5 440 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 ZSCAN31Q96LW9 406 aaPredicted RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 KIF2CQ99661 725 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 AMNQ9BXJ7 453 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 MOV10L1Q9BXT6 1211 aaKnown RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 R3HDMLQ9H3Y0 253 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 RIOX1Q9H6W3 641 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 JMJD4Q9H9V9 463 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 RAVER2Q9HCJ3 691 aaKnown RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 SH2B1Q9NRF2 756 aaPredicted RBP11.68□□□□□ -0.54
USP3-216ENST00000559873 LIMCH1Q9UPQ0 1083 aa11.68□□□□□ -0.54
USP3-216ENST00000559873 ABCB11O95342 1321 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 CNTNAP5Q8WYK1 1306 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 hCG_1984214I3L0E3 225 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 PLEKHA8P1O95397 391 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 PSMC4P43686 418 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 LBX1P52954 281 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 PRMT2P55345 433 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 KCTD2Q14681 263 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 QRICH1Q2TAL8 776 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 FBXO11Q86XK2 927 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 TRIM22Q8IYM9 498 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 ZNF713Q8N859 430 aaPredicted RBP11.67□□□□□ -0.54
USP3-216ENST00000559873 CD99L2Q8TCZ2 262 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 CPVLQ9H3G5 476 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 ACAD9Q9H845 621 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 EFCC1Q9HA90 598 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 VAT1LQ9HCJ6 419 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 PRDM10Q9NQV6 1147 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 RNF146Q9NTX7 359 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 TPCN1Q9ULQ1 816 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 HPS5Q9UPZ3 1129 aa11.67□□□□□ -0.54
USP3-216ENST00000559873 PNMA6FA0A0J9YX94 578 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 STRNO43815 780 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 PFKFB2O60825 505 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 ALAS1P13196 640 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 ERCC3P19447 782 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 SLC4A3P48751 1232 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 CCT2P78371 535 aaKnown RBP11.66□□□□□ -0.54
USP3-216ENST00000559873 STK3Q13188 491 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 GPR142Q7Z601 462 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 PLEKHH3Q7Z736 793 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 MTMR8Q96EF0 704 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 PIGSQ96S52 555 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 RNF26Q9BY78 433 aaPredicted RBP11.66□□□□□ -0.54
USP3-216ENST00000559873 MAF1Q9H063 256 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 PORCNQ9H237 461 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 SLC5A4Q9NY91 659 aa11.66□□□□□ -0.54
USP3-216ENST00000559873 COL11A1P12107 1806 aaPredicted RBP11.65□□□□□ -0.54
USP3-216ENST00000559873 PFASO15067 1338 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 ZNF536O15090 1300 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 CYTH3O43739 400 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 FCER1AP12319 257 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 IFNAR1P17181 557 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 CDC27P30260 824 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 Q3C1V9 767 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 USH1GQ495M9 461 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 PPP1R18Q6NYC8 613 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 CTU1Q7Z7A3 348 aaKnown RBP11.65□□□□□ -0.54
USP3-216ENST00000559873 MCF2L2Q86YR7 1114 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 ABRAQ8N0Z2 381 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 SRBD1Q8N5C6 995 aaKnown RBP11.65□□□□□ -0.54
USP3-216ENST00000559873 CCDC12Q8WUD4 166 aaPredicted RBP11.65□□□□□ -0.54
USP3-216ENST00000559873 GTF3C6Q969F1 213 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 AGBL1Q96MI9 1066 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 TRERF1Q96PN7 1200 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 MMP19Q99542 508 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 NUDT12Q9BQG2 462 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 HOMER2Q9NSB8 354 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 MRPL11Q9Y3B7 192 aaKnown RBP11.65□□□□□ -0.54
USP3-216ENST00000559873 TRIM17Q9Y577 477 aa11.65□□□□□ -0.54
USP3-216ENST00000559873 SLC15A5A6NIM6 579 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 PEX10O60683 326 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 PTPREP23469 700 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 ADD1P35611 737 aaKnown RBP11.64□□□□□ -0.55
USP3-216ENST00000559873 RGS2P41220 211 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 SNAP25P60880 206 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 SCRN1Q12765 414 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 ME3Q16798 604 aa11.64□□□□□ -0.55
USP3-216ENST00000559873 POTEEQ6S8J3 1075 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms