RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 EPS15P42566 896 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 GRAPQ13588 217 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 SLC10A5Q5PT55 438 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 C1QL4Q86Z23 238 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 WFDC3Q8IUB2 231 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 C12orf50Q8NA57 414 aaPredicted RBP9.43□□□□□ -0.9
SPG11-213ENST00000558988 C8orf58Q8NAV2 365 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 GRAPLQ8TC17 118 aaPredicted RBP9.43□□□□□ -0.9
SPG11-213ENST00000558988 BCL7CQ8WUZ0 217 aaPredicted RBP9.43□□□□□ -0.9
SPG11-213ENST00000558988 FAM84AQ96KN4 292 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 TOX2Q96NM4 488 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 MYD88Q99836 296 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 ZMYND15Q9H091 742 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 LRRC4CQ9HCJ2 640 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 MRS2Q9HD23 443 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 JAG2Q9Y219 1238 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 SLC5A6Q9Y289 635 aa9.43□□□□□ -0.9
SPG11-213ENST00000558988 BBOX1O75936 387 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 RAD17O75943 681 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 HSPA1AP0DMV8 641 aaKnown RBP9.42□□□□□ -0.9
SPG11-213ENST00000558988 HSPA1BP0DMV9 641 aaKnown RBP9.42□□□□□ -0.9
SPG11-213ENST00000558988 HYAL2Q12891 473 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 GRM1Q13255 1194 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 SPRED2Q7Z698 418 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 PNMA8AQ86V59 439 aaPredicted RBP9.42□□□□□ -0.9
SPG11-213ENST00000558988 TREML1Q86YW5 311 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 TSPYL6Q8N831 410 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 JMYQ8N9B5 988 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 GLIS3Q8NEA6 775 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 SUPT20HQ8NEM7 779 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 OR13H1Q8NG92 308 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 FBLIM1Q8WUP2 373 aa9.42□□□□□ -0.9
SPG11-213ENST00000558988 IRS4O14654 1257 aaPredicted RBP9.41□□□□□ -0.9
SPG11-213ENST00000558988 ANP32CO43423 234 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 ZNF853P0CG23 659 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 SP8Q8IXZ3 490 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 CNTROBQ8N137 903 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 CELF1Q92879 486 aaKnown RBP9.41□□□□□ -0.9
SPG11-213ENST00000558988 GPR101Q96P66 508 aaPredicted RBP9.41□□□□□ -0.9
SPG11-213ENST00000558988 ISCA1Q9BUE6 129 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 BCL2L13Q9BXK5 485 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 PRKAG2Q9UGJ0 569 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 ZNRF3Q9ULT6 936 aa9.41□□□□□ -0.9
SPG11-213ENST00000558988 ABT1Q9ULW3 272 aaKnown RBP9.41□□□□□ -0.9
SPG11-213ENST00000558988 DDX60Q8IY21 1712 aaKnown RBP9.41□□□□□ -0.9
SPG11-213ENST00000558988 TMEM88BA6NKF7 163 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 ZEB1P37275 1124 aaPredicted RBP9.4□□□□□ -0.9
SPG11-213ENST00000558988 GMPSP49915 693 aaPredicted RBP9.4□□□□□ -0.9
SPG11-213ENST00000558988 FMR1Q06787 632 aaKnown RBP eCLIP9.4□□□□□ -0.93e-7■■■■□ 25.7
SPG11-213ENST00000558988 CXCL9Q07325 125 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 CCDC30Q5VVM6 783 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 CDPF1Q6NVV7 123 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 BHLHE22Q8NFJ8 381 aaPredicted RBP9.4□□□□□ -0.9
SPG11-213ENST00000558988 WNT8BQ93098 351 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 STK31Q9BXU1 1019 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 ADAM19Q9H013 955 aa9.4□□□□□ -0.9
SPG11-213ENST00000558988 LTBP1Q14766 1721 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 PASKQ96RG2 1323 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 H3BRJ5 948 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 TRAF5O00463 557 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 DDX58O95786 925 aaKnown RBP9.39□□□□□ -0.91
SPG11-213ENST00000558988 PTPRAP18433 802 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 GPSM2P81274 684 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 KIAA2012Q0VF49 1180 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 CIAPIN1Q6FI81 312 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 TTLL10Q6ZVT0 673 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 MYO19Q96H55 970 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 ZNF408Q9H9D4 720 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 DBNDD1Q9H9R9 158 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 OSGEPQ9NPF4 335 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 MAP3K2Q9Y2U5 619 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 COL4A1P02462 1669 aa9.39□□□□□ -0.91
SPG11-213ENST00000558988 SHTN1A0MZ66 631 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 TIAF1O95411 115 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 RAP1GAPP47736 663 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 TRIP4Q15650 581 aaPredicted RBP9.38□□□□□ -0.91
SPG11-213ENST00000558988 TWISTNBQ3B726 338 aaPredicted RBP9.38□□□□□ -0.91
SPG11-213ENST00000558988 WWC1Q8IX03 1113 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 ZBTB38Q8NAP3 1195 aaPredicted RBP9.38□□□□□ -0.91
SPG11-213ENST00000558988 ZSCAN18Q8TBC5 510 aaPredicted RBP9.38□□□□□ -0.91
SPG11-213ENST00000558988 GATA6Q92908 595 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 RTFDC1Q9BY42 306 aaPredicted RBP9.38□□□□□ -0.91
SPG11-213ENST00000558988 PBX4Q9BYU1 374 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 CWC25Q9NXE8 425 aaPredicted RBP9.38□□□□□ -0.91
SPG11-213ENST00000558988 GPRC5DQ9NZD1 345 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 LMCD1Q9NZU5 365 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 CEP350Q5VT06 3117 aa9.38□□□□□ -0.91
SPG11-213ENST00000558988 CNTNAP1P78357 1384 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 ADAMTSL1Q8N6G6 1762 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 PI4KAP2A4QPH2 592 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 YDJCA8MPS7 323 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 UFL1O94874 794 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 USP11P51784 963 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 RPS8P62241 208 aaKnown RBP9.37□□□□□ -0.91
SPG11-213ENST00000558988 NEXNQ0ZGT2 675 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 TNIP1Q15025 636 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 SF3B3Q15393 1217 aaKnown RBP9.37□□□□□ -0.91
SPG11-213ENST00000558988 CWF19L2Q2TBE0 894 aaKnown RBP9.37□□□□□ -0.91
SPG11-213ENST00000558988 G2E3Q7L622 706 aa9.37□□□□□ -0.91
SPG11-213ENST00000558988 TMC4Q7Z404 712 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms