RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 SDSP20132 328 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 NOVP48745 357 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 OAZ1P54368 228 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 STK11IPQ8N1F8 1099 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 REPS2Q8NFH8 660 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 NPLOC4Q8TAT6 608 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 TEX13BQ9BXU2 312 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 TCP11L1Q9NUJ3 509 aa11.98□□□□□ -0.49
USP3-207ENST00000558218 ZNF214Q9UL59 606 aaPredicted RBP11.98□□□□□ -0.49
USP3-207ENST00000558218 ZNF236Q9UL36 1845 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 TSPY2A6NKD2 308 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 H0YGN5 161 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 RAD21O60216 631 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 COBLO75128 1261 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 ZBED4O75132 1171 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 HSPD1P10809 573 aaKnown RBP11.97□□□□□ -0.49
USP3-207ENST00000558218 KCTD2Q14681 263 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 SLFN13Q68D06 897 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 RCSD1Q6JBY9 416 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 CCDC129Q6ZRS4 1044 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.97□□□□□ -0.49
USP3-207ENST00000558218 MSL3Q8N5Y2 521 aaKnown RBP11.97□□□□□ -0.49
USP3-207ENST00000558218 CHURC1Q8WUH1 139 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 RILPL2Q969X0 211 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 GMCL1Q96IK5 515 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 FAM227BQ96M60 508 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 TTC14Q96N46 770 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 FBXO28Q9NVF7 368 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 FLRT1Q9NZU1 646 aa11.97□□□□□ -0.49
USP3-207ENST00000558218 ZNFX1Q9P2E3 1918 aaKnown RBP11.97□□□□□ -0.49
USP3-207ENST00000558218 MYH4Q9Y623 1939 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 CCDC171Q6TFL3 1326 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 A0A0D9SFI3 127 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 BMP3P12645 472 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 CCND3P30281 292 aaPredicted RBP11.96□□□□□ -0.49
USP3-207ENST00000558218 NMIQ13287 307 aaPredicted RBP11.96□□□□□ -0.49
USP3-207ENST00000558218 FAM47AQ5JRC9 791 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 VPS53Q5VIR6 699 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 FAM160B2Q86V87 743 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 SPNS2Q8IVW8 549 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 MMP19Q99542 508 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 RNF41Q9H4P4 317 aaPredicted RBP11.96□□□□□ -0.49
USP3-207ENST00000558218 C11orf49Q9H6J7 331 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 SLC38A10Q9HBR0 1119 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 IL17RBQ9NRM6 502 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 WDR70Q9NW82 654 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 FBXO40Q9UH90 709 aa11.96□□□□□ -0.49
USP3-207ENST00000558218 DDX20Q9UHI6 824 aaKnown RBP11.96□□□□□ -0.49
USP3-207ENST00000558218 CTDP1Q9Y5B0 961 aaPredicted RBP11.96□□□□□ -0.49
USP3-207ENST00000558218 SEPT4O43236 478 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 RANBP6O60518 1105 aaKnown RBP11.95□□□□□ -0.5
USP3-207ENST00000558218 COL6A1P12109 1028 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 CYBAP13498 195 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 CYP2C19P33261 490 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 SLC1A4P43007 532 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 CTDSPL2Q05D32 466 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 ZNF792Q3KQV3 632 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 HABP4Q5JVS0 413 aaKnown RBP11.95□□□□□ -0.5
USP3-207ENST00000558218 ZNF454Q8N9F8 522 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 ARRDC4Q8NCT1 418 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 CHST13Q8NET6 341 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 STAG1Q8WVM7 1258 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 MAML3Q96JK9 1138 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 NUP88Q99567 741 aaPredicted RBP11.95□□□□□ -0.5
USP3-207ENST00000558218 STX8Q9UNK0 236 aa11.95□□□□□ -0.5
USP3-207ENST00000558218 STAT2P52630 851 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 CCDC178Q5BJE1 867 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 AKNAD1Q5T1N1 836 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 SNRNP48Q6IEG0 339 aaKnown RBP11.94□□□□□ -0.5
USP3-207ENST00000558218 MFSD6Q6ZSS7 791 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 TINF2Q9BSI4 451 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 DIAPH3Q9NSV4 1193 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 CTNNA3Q9UI47 895 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 PNMA2Q9UL42 364 aa11.94□□□□□ -0.5
USP3-207ENST00000558218 COL11A1P12107 1806 aaPredicted RBP11.94□□□□□ -0.5
USP3-207ENST00000558218 CEP290O15078 2479 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 DNAJC25-GNG10A0A024R161 153 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 A0A1W2PPC1 479 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 TMEM232C9JQI7 657 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 DNM1LO00429 736 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 ZNF213O14771 459 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 TOP1P11387 765 aaKnown RBP11.93□□□□□ -0.5
USP3-207ENST00000558218 CNGA1P29973 690 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 PLCB2Q00722 1185 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 CAMK2BQ13554 666 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 TKFCQ3LXA3 575 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 MAMDC4Q6UXC1 1216 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 ZNF589Q86UQ0 364 aaPredicted RBP11.93□□□□□ -0.5
USP3-207ENST00000558218 LRRC47Q8N1G4 583 aaKnown RBP11.93□□□□□ -0.5
USP3-207ENST00000558218 DIS3LQ8TF46 1054 aaKnown RBP11.93□□□□□ -0.5
USP3-207ENST00000558218 DCAF4Q8WV16 495 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 KIFC2Q96AC6 838 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 DDX11Q96FC9 970 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 DSCC1Q9BVC3 393 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 INCENPQ9NQS7 918 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 RIPK3Q9Y572 518 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 MKI67P46013 3256 aaKnown RBP11.93□□□□□ -0.5
USP3-207ENST00000558218 BRCA2P51587 3418 aa11.93□□□□□ -0.5
USP3-207ENST00000558218 MCCP23508 829 aa11.92□□□□□ -0.5
USP3-207ENST00000558218 PSEN2P49810 448 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms