RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 ZNF655Q8N720 491 aaPredicted RBP6.69□□□□□ -1.34
PRPF39-212ENST00000557477 ENOX1Q8TC92 643 aaKnown RBP6.69□□□□□ -1.34
PRPF39-212ENST00000557477 SLKQ9H2G2 1235 aaPredicted RBP6.69□□□□□ -1.34
PRPF39-212ENST00000557477 NCOA5Q9HCD5 579 aaKnown RBP6.69□□□□□ -1.34
PRPF39-212ENST00000557477 GPATCH2Q9NW75 528 aa6.69□□□□□ -1.34
PRPF39-212ENST00000557477 BLACEA4D250 179 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 CYP26A1O43174 497 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 RAPGEF3O95398 923 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 IFNGR1P15260 489 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 KCNJ6P48051 423 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 CLCN7P51798 805 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 SUMO1P63165 101 aaKnown RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 DALRD3Q5D0E6 543 aaKnown RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 PRSS36Q5K4E3 855 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 CWF19L1Q69YN2 538 aaKnown RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 TSPYL5Q86VY4 417 aaPredicted RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 SYNPOQ8N3V7 929 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 TMEM145Q8NBT3 493 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 C1orf159Q96HA4 380 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 IPO9Q96P70 1041 aaKnown RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 PUS7Q96PZ0 661 aaKnown RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 TRIT1Q9H3H1 467 aaKnown RBP6.68□□□□□ -1.34
PRPF39-212ENST00000557477 SEMA3GQ9NS98 782 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 PIM2Q9P1W9 311 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 ZSWIM5Q9P217 1185 aa6.68□□□□□ -1.34
PRPF39-212ENST00000557477 CCDC163A0A0D9SF12 145 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 ADAM23O75077 832 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 C6orf222P0C671 652 aaPredicted RBP6.67□□□□□ -1.34
PRPF39-212ENST00000557477 NCLP19338 710 aaKnown RBP6.67□□□□□ -1.34
PRPF39-212ENST00000557477 TPP2P29144 1249 aaPredicted RBP6.67□□□□□ -1.34
PRPF39-212ENST00000557477 HOXC12P31275 282 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 BMP8BP34820 402 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 ECI1P42126 302 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 POU4F1Q01851 419 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 SCRN1Q12765 414 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 PABPC4Q13310 644 aaKnown RBP eCLIP6.67□□□□□ -1.34
PRPF39-212ENST00000557477 IFI16Q16666 785 aaKnown RBP6.67□□□□□ -1.34
PRPF39-212ENST00000557477 GAB4Q2WGN9 574 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 SLC51AQ86UW1 340 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 KRTAP1-3Q8IUG1 177 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 NETO1Q8TDF5 533 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 UBE2FQ969M7 185 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 GPATCH3Q96I76 525 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 CLUHP3Q96NS8 147 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 SLC12A9Q9BXP2 914 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 CYP26B1Q9NR63 512 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 ZC3H7BQ9UGR2 993 aaKnown RBP6.67□□□□□ -1.34
PRPF39-212ENST00000557477 PITPNM2Q9BZ72 1349 aa6.67□□□□□ -1.34
PRPF39-212ENST00000557477 AURKAO14965 403 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 TGFB1P01137 390 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 SCG5P05408 212 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 SYPP08247 313 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 FOSL1P15407 271 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 VAV1P15498 845 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 HOXA10P31260 410 aaPredicted RBP6.66□□□□□ -1.34
PRPF39-212ENST00000557477 MAP4K2Q12851 820 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 NTRK3Q16288 839 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 SLC35F1Q5T1Q4 408 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 RNF187Q5TA31 235 aaPredicted RBP6.66□□□□□ -1.34
PRPF39-212ENST00000557477 DENND5AQ6IQ26 1287 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 THAP5Q7Z6K1 395 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 FILIP1Q7Z7B0 1213 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 USHBP1Q8N6Y0 703 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 KCTD13Q8WZ19 329 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 COPS5Q92905 334 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 FCRL3Q96P31 734 aaPredicted RBP6.66□□□□□ -1.34
PRPF39-212ENST00000557477 FOXP3Q9BZS1 431 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 ATP13A1Q9HD20 1204 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 IFT57Q9NWB7 429 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 BACE2Q9Y5Z0 518 aa6.66□□□□□ -1.34
PRPF39-212ENST00000557477 DNAJC25-GNG10A0A024R161 153 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 IRS4O14654 1257 aaPredicted RBP6.65□□□□□ -1.34
PRPF39-212ENST00000557477 PLD2O14939 933 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 ZNF205O95201 554 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 RTP2Q5QGT7 225 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 DHX37Q8IY37 1157 aaKnown RBP6.65□□□□□ -1.34
PRPF39-212ENST00000557477 KREMEN2Q8NCW0 462 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 NINJ1Q92982 152 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 MRPL4Q9BYD3 311 aaKnown RBP6.65□□□□□ -1.34
PRPF39-212ENST00000557477 GPRC5CQ9NQ84 441 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 DUSP13Q9UII6 198 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 TCFL5Q9UL49 500 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 PLAAQ9Y263 795 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 PCDHA11Q9Y5I1 949 aa6.65□□□□□ -1.34
PRPF39-212ENST00000557477 TMEM265A0A087WTH1 108 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 DNAJC6O75061 913 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 FKTNO75072 461 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 RFPL3O75679 317 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 CPP00450 1065 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 THBDP07204 575 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 GSTM1P09488 218 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 ITGB7P26010 798 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 LTKP29376 864 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 MASP1P48740 699 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 PCBP3P57721 371 aaKnown RBP6.64□□□□□ -1.35
PRPF39-212ENST00000557477 FNDC3BQ53EP0 1204 aaKnown RBP6.64□□□□□ -1.35
PRPF39-212ENST00000557477 NIM1KQ8IY84 436 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 LINC00116Q8NCU8 138 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 NPLOC4Q8TAT6 608 aa6.64□□□□□ -1.35
PRPF39-212ENST00000557477 FRS2Q8WU20 508 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms