RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	CACNA1S	Q13698	1873 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	hCG_1642624	A0A1W2PR95	340 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	SYF2	O95926	243 aa	Known RBP	18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	HOXA7	P31268	230 aa	Predicted RBP	18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	PRPH	P41219	470 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	TNNT3	P45378	269 aa	Predicted RBP	18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	GNAQ	P50148	359 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	ZNF572	Q7Z3I7	529 aa	Predicted RBP	18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	DAGLB	Q8NCG7	672 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	CRACR2A	Q9BSW2	395 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	KBTBD4	Q9NVX7	518 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	PCDHA4	Q9UN74	947 aa		18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	CIC	Q96RK0	1608 aa	Predicted RBP	18.22	■□□□□ 0.51
SHMT2-231	ENST00000557433	SNAP23	O00161	211 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	ATP1A1	P05023	1023 aa	Known RBP	18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	PRLR	P16471	622 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	SBK1	Q52WX2	424 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	COBLL1	Q53SF7	1204 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	CCDC178	Q5BJE1	867 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	TTI2	Q6NXR4	508 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	LRRC31	Q6UY01	552 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	AMOTL1	Q8IY63	956 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	C10orf67	Q8IYJ2	551 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	AK8	Q96MA6	479 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	MMS19	Q96T76	1030 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	CAVIN4	Q5BKX8	364 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	CCNI2	Q6ZMN8	369 aa	Predicted RBP	18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	ATP8A2	Q9NTI2	1148 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	ARPP21	Q9UBL0	812 aa	Predicted RBP	18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433	LCMT1	Q9UIC8	334 aa		18.21	■□□□□ 0.51
SHMT2-231	ENST00000557433		A6NNZ2	444 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	KLRC4	O43908	158 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	TFRC	P02786	760 aa	Known RBP	18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	KIF5A	Q12840	1032 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	TUBB8	Q3ZCM7	444 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	MMGT1	Q8N4V1	131 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	TRIM58	Q8NG06	486 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	CAGE1	Q8TC20	777 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	TUBGCP2	Q9BSJ2	902 aa		18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	CRNKL1	Q9BZJ0	848 aa	Known RBP	18.2	■□□□□ 0.5
SHMT2-231	ENST00000557433	USO1	O60763	962 aa	Known RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	SHOX2	O60902	331 aa	Predicted RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	TRIM21	P19474	475 aa	Known RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	CCNE1	P24864	410 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	UBA7	P41226	1012 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	VAV2	P52735	878 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	SMARCC1	Q92922	1105 aa	Predicted RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	ERGIC2	Q96RQ1	377 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	TRIM10	Q9UDY6	481 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	JRKL	Q9Y4A0	524 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	ZC3H4	Q9UPT8	1303 aa	Known RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	CCDC194	A0A1B0GVG4	234 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	NUTM2B	A6NNL0	878 aa	Predicted RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	NUTM2E	B1AL46	878 aa	Predicted RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	USP17L12	C9JPN9	530 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	USP17L21	D6R901	530 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	COBL	O75128	1261 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	NTSR2	O95665	410 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	HNRNPH3	P31942	346 aa	Known RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	CORO7	P57737	925 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	NAALADL2	Q58DX5	795 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	GBP6	Q6ZN66	633 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	CSGALNACT2	Q8N6G5	542 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	PPM1E	Q8WY54	764 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	ANKS1A	Q92625	1134 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	P2RX5	Q93086	422 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	RSPH14	Q9UHP6	348 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	FAM184B	Q9ULE4	1060 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	PHLPP1	O60346	1717 aa		18.19	■□□□□ 0.5
SHMT2-231	ENST00000557433	LAMB1	P07942	1786 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	ENC1	O14682	589 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	CLSTN1	O94985	981 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	TBC1D8B	Q0IIM8	1120 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	SPA17	Q15506	151 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	FKBP15	Q5T1M5	1219 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	DGKH	Q86XP1	1220 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	RASSF8	Q8NHQ8	419 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	SECISBP2L	Q93073	1101 aa	Known RBP	18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	CCDC87	Q9NVE4	849 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	HDAC6	Q9UBN7	1215 aa		18.18	■□□□□ 0.5
SHMT2-231	ENST00000557433	TRIM49B	A6NDI0	452 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433		M0R2N6	131 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	PES1	O00541	588 aa	Known RBP	18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	TRIM66	O15016	1216 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	PHACTR2	O75167	634 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	TACC1	O75410	805 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	DNAJC21	Q5F1R6	531 aa	Known RBP	18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	CCDC155	Q8N6L0	562 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	FAM76A	Q8TAV0	307 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	MAPK8IP1	Q9UQF2	711 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	ABCB11	O95342	1321 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433		A0A1B0GUL6	1792 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433		B4DLN1	442 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	IDE	P14735	1019 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	PMS1	P54277	932 aa	Known RBP	18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	DYNLL1	P63167	89 aa	Known RBP	18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	AMPD3	Q01432	767 aa		18.17	■□□□□ 0.5
SHMT2-231	ENST00000557433	ORC2	Q13416	577 aa	Predicted RBP	18.17	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms