RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PREX1	Q8TCU6	1659 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC151	A5D8V7	595 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005		H3BQF6	201 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	BAG3	O95817	575 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CLTA	P09496	248 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CDC25A	P30304	524 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADD2	P35612	726 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	SESN3	P58005	492 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	EHHADH	Q08426	723 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ST3GAL1	Q11201	340 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	KRT71	Q3SY84	523 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	NFRKB	Q6P4R8	1299 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRC31	Q6UY01	552 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	SPATS2	Q86XZ4	545 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC65	Q8IXS2	484 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	BLID	Q8IZY5	108 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	KLHL34	Q8N239	644 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ENOX1	Q8TC92	643 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	SNX29	Q8TEQ0	813 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	LRRC45	Q96CN5	670 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PNKP	Q96T60	521 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	SLC24A3	Q9HC58	644 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	TFR2	Q9UP52	801 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	SRPRB	Q9Y5M8	271 aa	Known RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	FAM169A	Q9Y6X4	670 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PDE8A	O60658	829 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PLEKHA8P1	O95397	391 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC172	P0C7W6	258 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	GUCY1A2	P33402	732 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PHKA1	P46020	1223 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CACNB1	Q02641	598 aa	Predicted RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	GFPT1	Q06210	699 aa	Predicted RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ACTN3	Q08043	901 aa	Predicted RBP	5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	TNIP1	Q15025	636 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	GRIPAP1	Q4V328	841 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PEX26	Q7Z412	305 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ERMN	Q8TAM6	284 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	GDAP1	Q8TB36	358 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	CEP63	Q96MT8	703 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	ORAI2	Q96SN7	254 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	TUBGCP2	Q9BSJ2	902 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	HAUS4	Q9H6D7	363 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	TMEM2	Q9UHN6	1383 aa		5.51	□□□□□ -1.53
SYNE2-223	ENST00000557005	PPFIA4	O75335	1185 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	EIF4A3	P38919	411 aa	Known RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	KLK7	P49862	253 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	DYNLL1	P63167	89 aa	Known RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADCY1	Q08828	1119 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	MMS22L	Q6ZRQ5	1243 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	THAP9	Q9H5L6	903 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	TMEM51	Q9NW97	253 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZNF446	Q9NWS9	450 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	SMARCAL1	Q9NZC9	954 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	MROH1	Q8NDA8	1641 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CD163L1	Q9NR16	1453 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CIAO1	O76071	339 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	IL2RB	P14784	551 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ABCB4	P21439	1286 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ERCC5	P28715	1186 aa	Predicted RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	LTK	P29376	864 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	PRPH	P41219	470 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	HDLBP	Q00341	1268 aa	Known RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	C6orf163	Q5TEZ5	329 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	RUFY4	Q6ZNE9	571 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	MAEA	Q7L5Y9	396 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	TAOK1	Q7L7X3	1001 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	MB21D2	Q8IYB1	491 aa	Predicted RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	LPIN2	Q92539	896 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ZNF219	Q9P2Y4	722 aa	Predicted RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	IFT172	Q9UG01	1749 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005		H7C1D1	291 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ADCY7	P51828	1080 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CYP27A1	Q02318	531 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	FOXR1	Q6PIV2	292 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	LMNTD2	Q8IXW0	634 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC13	Q8IYE1	715 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	IFT74	Q96LB3	600 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	MMS19	Q96T76	1030 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	COPRS	Q9NQ92	184 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	DENND2A	Q9ULE3	1009 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	GDA	Q9Y2T3	454 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CYP2D7	A0A087X1C5	515 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	NR1D1	P20393	614 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ARID4A	P29374	1257 aa	Predicted RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	DNM2	P50570	870 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	REXO1L1P	Q8IX06	675 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	UBL4B	Q8N7F7	174 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	FAM133A	Q8N9E0	248 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CCDC63	Q8NA47	563 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	HAUS2	Q9NVX0	235 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	TPX2	Q9ULW0	747 aa	Known RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	SUFU	Q9UMX1	484 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	PCDHA4	Q9UN74	947 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	NEO1	Q92859	1461 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	KIDINS220	Q9ULH0	1771 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	UBN2	Q6ZU65	1347 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	RGS16	O15492	202 aa	Predicted RBP	5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	CIB2	O75838	187 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	TBC1D8	O95759	1140 aa		5.5	□□□□□ -1.53
SYNE2-223	ENST00000557005	ATP5D	P30049	168 aa		5.5	□□□□□ -1.53

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