RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CNTROBQ8N137 903 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 MMGT1Q8N4V1 131 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 ERMNQ8TAM6 284 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 RUFY2Q8WXA3 655 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 NLRP2Q9NX02 1062 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 RHBDL2Q9NX52 303 aa15.28■□□□□ 0.04
SHMT2-226ENST00000556825 THRAP3Q9Y2W1 955 aaKnown RBP15.28■□□□□ 0.04
SHMT2-226ENST00000556825 GOLGA6L10A0A0M3HER8 536 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 PRC1O43663 620 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 GSTA2P09210 222 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 ATP6V1C1P21283 382 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 KLC1Q07866 573 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 STK3Q13188 491 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 TOB2Q14106 344 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-226ENST00000556825 PI16Q6UXB8 463 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 HOOK3Q86VS8 718 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 STAG2Q8N3U4 1231 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 RPS6KC1Q96S38 1066 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 PNPLA6Q8IY17 1366 aa15.27■□□□□ 0.04
SHMT2-226ENST00000556825 DIAPH1O60610 1272 aaKnown RBP15.27■□□□□ 0.03
SHMT2-226ENST00000556825 FECHP22830 423 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 PCK1P35558 622 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 PSMD7P51665 324 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 HDAC4P56524 1084 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 PAK2Q13177 524 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 CLPPQ16740 277 aaPredicted RBP15.27■□□□□ 0.03
SHMT2-226ENST00000556825 PPFIBP1Q86W92 1011 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 SLC15A3Q8IY34 581 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 NSUN7Q8NE18 718 aaKnown RBP15.27■□□□□ 0.03
SHMT2-226ENST00000556825 SLF1Q9BQI6 1058 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 SLC4A7Q9Y6M7 1214 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 MYH15Q9Y2K3 1946 aa15.27■□□□□ 0.03
SHMT2-226ENST00000556825 BAG3O95817 575 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 RFC5P40937 340 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 OXCT1P55809 520 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 NR1I3Q14994 352 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 CEP128Q6ZU80 1094 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 EXOC3L1Q86VI1 746 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 FBXO41Q8TF61 875 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 EMILIN1Q9Y6C2 1016 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 TNRQ92752 1358 aa15.26■□□□□ 0.03
SHMT2-226ENST00000556825 IFIT3O14879 490 aaKnown RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 SRGAP2O75044 1071 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 LGR5O75473 907 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 TNFRSF8P28908 595 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 USP46P62068 366 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 RBL2Q08999 1139 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 CREB3L3Q68CJ9 461 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 BLOC1S2Q6QNY1 142 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 SEPT14Q6ZU15 432 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 HELBQ8NG08 1087 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 WDR66Q8TBY9 1149 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 CAGE1Q8TC20 777 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 PPP2R3CQ969Q6 453 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 CAPZA3Q96KX2 299 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 HELLSQ9NRZ9 838 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 ITGB1BP2Q9UKP3 347 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 OVOS2A0A0G2JMS6 1433 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 OVOS2A0A0J9YW53 1432 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 OVOS2Q6IE36 1432 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 PTPRMP28827 1452 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 ATP1A1P05023 1023 aaKnown RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 PDHA1P08559 390 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 PAEPP09466 180 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 ZNF18P17022 549 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 FUT4P22083 530 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 RPS6KB1P23443 525 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 TRPC1P48995 793 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 ALDH5A1P51649 535 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 SH2D4BQ5SQS7 431 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 RC3H1Q5TC82 1133 aaKnown RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 FOXB2Q5VYV0 432 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 CCDC102BQ68D86 513 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 TMTC1Q8IUR5 882 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 PI4K2BQ8TCG2 481 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 CCDC51Q96ER9 411 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 TAF1DQ9H5J8 278 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 LUC7LQ9NQ29 371 aaKnown RBP15.25■□□□□ 0.03
SHMT2-226ENST00000556825 DLGAP2Q9P1A6 1054 aa15.25■□□□□ 0.03
SHMT2-226ENST00000556825 ENC1O14682 589 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 BCRP11274 1271 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 XBP1P17861 261 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 GSTT1P30711 240 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 CCDC197Q8NCU1 140 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 NCSTNQ92542 709 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 AZIN2Q96A70 460 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 ZNF653Q96CK0 615 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 DDX27Q96GQ7 796 aaKnown RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 CCDC43Q96MW1 224 aaKnown RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 FAM192AQ9GZU8 254 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 SIL1Q9H173 461 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 DDX25Q9UHL0 483 aaKnown RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 SH3GLB1Q9Y371 365 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 A0A1W2PP64 1363 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 GNAI2P04899 355 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 DRD4P21917 467 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 CA8P35219 290 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 PLOD1Q02809 727 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-226ENST00000556825 C2orf54Q08AI8 447 aa15.24■□□□□ 0.03
SHMT2-226ENST00000556825 ZNF365Q70YC5 407 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms