RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 METAP2P50579 478 aaKnown RBP eCLIP12.66□□□□□ -0.382e-6■■■■□ 20.2
SHMT2-218ENST00000555213 APOBRQ0VD83 1088 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 PPP2R5BQ15173 497 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 RTN1Q16799 776 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 WDR78Q5VTH9 848 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 SNRNP48Q6IEG0 339 aaKnown RBP12.66□□□□□ -0.38
SHMT2-218ENST00000555213 TTBK2Q6IQ55 1244 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 SHCBP1Q8NEM2 672 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 CD99L2Q8TCZ2 262 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 COA7Q96BR5 231 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 ZNF274Q96GC6 653 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-218ENST00000555213 BTBD7Q9P203 1132 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 MAD2L2Q9UI95 211 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 HPS5Q9UPZ3 1129 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 IVNS1ABPQ9Y6Y0 642 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 PALM3A6NDB9 673 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-218ENST00000555213 ATP2A1O14983 1001 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 PFKFB2O60825 505 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 CNMDO75829 334 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 RXRAP19793 462 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 HOXD10P28358 340 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 STAT3P40763 770 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 PSMC4P43686 418 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 TRAF1Q13077 416 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 TMEM132BQ14DG7 1078 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 CCDC174Q6PII3 467 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 CCDC144CPQ8IYA2 1237 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 CPXCR1Q8N123 301 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 FANCBQ8NB91 859 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 RANBP17Q9H2T7 1088 aaKnown RBP12.65□□□□□ -0.38
SHMT2-218ENST00000555213 MROH8Q9H579 483 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 EFCC1Q9HA90 598 aa12.65□□□□□ -0.38
SHMT2-218ENST00000555213 SH2B1Q9NRF2 756 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-218ENST00000555213 ZNF214Q9UL59 606 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-218ENST00000555213 PARP14Q460N5 1801 aa12.65□□□□□ -0.39
SHMT2-218ENST00000555213 CTDNEP1O95476 244 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 ICAM1P05362 532 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 CDC37Q16543 378 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-218ENST00000555213 TKFCQ3LXA3 575 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 CTU1Q7Z7A3 348 aaKnown RBP12.64□□□□□ -0.39
SHMT2-218ENST00000555213 NCAPG2Q86XI2 1143 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 RAB11FIP4Q86YS3 637 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 RIOX2Q8IUF8 465 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 CCDC83Q8IWF9 413 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 ADGRF4Q8IZF3 695 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 STAG2Q8N3U4 1231 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 REPS2Q8NFH8 660 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 SOCS4Q8WXH5 440 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 SPZ1Q9BXG8 430 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 MOV10L1Q9BXT6 1211 aaKnown RBP12.64□□□□□ -0.39
SHMT2-218ENST00000555213 UBA5Q9GZZ9 404 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 RAVER2Q9HCJ3 691 aaKnown RBP12.64□□□□□ -0.39
SHMT2-218ENST00000555213 SEC63Q9UGP8 760 aaKnown RBP12.64□□□□□ -0.39
SHMT2-218ENST00000555213 FBXO40Q9UH90 709 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 CCPG1Q9ULG6 757 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 ZDHHC9Q9Y397 364 aa12.64□□□□□ -0.39
SHMT2-218ENST00000555213 RLFQ13129 1914 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 PEX10O60683 326 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 ECM2O94769 699 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-218ENST00000555213 ERCC3P19447 782 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 SMARCA1P28370 1054 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 PRMT2P55345 433 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 SCRN1Q12765 414 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 CPLX2Q6PUV4 134 aaKnown RBP12.63□□□□□ -0.39
SHMT2-218ENST00000555213 TMTC3Q6ZXV5 915 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 PLEKHH3Q7Z736 793 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 GTF3C6Q969F1 213 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 RRP36Q96EU6 259 aaKnown RBP12.63□□□□□ -0.39
SHMT2-218ENST00000555213 TRIM47Q96LD4 638 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 PORCNQ9H237 461 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 VAT1LQ9HCJ6 419 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 FAM217BQ9NTX9 383 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-218ENST00000555213 TRIM17Q9Y577 477 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 NID2Q14112 1375 aa12.63□□□□□ -0.39
SHMT2-218ENST00000555213 CPLX1O14810 134 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 ZBTB5O15062 677 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 SNAP25P60880 206 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 STK3Q13188 491 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 PKP1Q13835 747 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 KCTD2Q14681 263 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 PKN2Q16513 984 aaKnown RBP12.62□□□□□ -0.39
SHMT2-218ENST00000555213 Q3C1V9 767 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 POTEEQ6S8J3 1075 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 GPR142Q7Z601 462 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 HOMER1Q86YM7 354 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 CHST13Q8NET6 341 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 ARHGAP39Q9C0H5 1083 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 CPVLQ9H3G5 476 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 ACAD9Q9H845 621 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 JMJD4Q9H9V9 463 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 HOMER2Q9NSB8 354 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 SLC5A4Q9NY91 659 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 CHMP5Q9NZZ3 219 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 PCDH10Q9P2E7 1040 aa12.62□□□□□ -0.39
SHMT2-218ENST00000555213 STRNO43815 780 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 CDKL5O76039 1030 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 PLEKHA8P1O95397 391 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 FCER1AP12319 257 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 ALAS1P13196 640 aa12.61□□□□□ -0.39
SHMT2-218ENST00000555213 QRICH1Q2TAL8 776 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms