RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 SLC43A3Q8NBI5 491 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 DHX38Q92620 1227 aaKnown RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 TINF2Q9BSI4 451 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 ASCC2Q9H1I8 757 aaPredicted RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 ZNF552Q9H707 407 aaPredicted RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 CHST7Q9NS84 486 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 AP5S1Q9NUS5 200 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 ZMYM5Q9UJ78 669 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 THOC2Q8NI27 1593 aaKnown RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 FADS2P1A8MWK0 482 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 RFXAPO00287 272 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 NUAK1O60285 661 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 SEMA7AO75326 666 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 PDE6BP35913 854 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 CCNFP41002 786 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 GJA8P48165 433 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 PCBP3P57721 371 aaKnown RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 RTP1P59025 263 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 DLG4P78352 724 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 CHRNEQ04844 493 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 DUSP4Q13115 394 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 RTP2Q5QGT7 225 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 ADGRF1Q5T601 910 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 INTS3Q68E01 1043 aaKnown RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 SPPL2CQ8IUH8 684 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 CXorf38Q8TB03 319 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 PANK1Q8TE04 598 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 BRF1Q92994 677 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 GPRASP2Q96D09 838 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 CWC22Q9HCG8 908 aaKnown RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 ERVK13-1Q9NX77 482 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 SUCOQ9UBS9 1254 aaKnown RBP2.39□□□□□ -2.03
PRPF39-208ENST00000554785 FBXL21Q9UKT6 434 aa2.39□□□□□ -2.03
PRPF39-208ENST00000554785 LTBP3Q9NS15 1303 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 NRDCO43847 1150 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 PEX10O60683 326 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 TP53P04637 393 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 VAV1P15498 845 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 LINC00310P59036 64 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 CHMP4BP1P59074 171 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SSPNQ14714 243 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SNX17Q15036 470 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 LRRFIP1Q32MZ4 808 aaKnown RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 UNC5AQ6ZN44 842 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 IRF2BP1Q8IU81 584 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SPATA32Q96LK8 384 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 CDADC1Q9BWV3 514 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 IRF2BPLQ9H1B7 796 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SLC6A17Q9H1V8 727 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 GINM1Q9NU53 330 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 GPR55Q9Y2T6 319 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 PCDHB12Q9Y5F1 795 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 BAZ1AQ9NRL2 1556 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 H0Y8X5 98 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 ZNF205O95201 554 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 MSL3P1P0C860 447 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 DNAJA1P31689 397 aaKnown RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 BMP8BP34820 402 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 KIR2DL1P43626 348 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 KIR2DL2P43627 348 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 EPHB3P54753 998 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 ZNF445P59923 1031 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 ARID5AQ03989 594 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SLC14A2Q15849 920 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 HSF5Q4G112 596 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 ZNF385BQ569K4 471 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 FBXW10Q5XX13 1052 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SLCO6A1Q86UG4 719 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 C7orf61Q8IZ16 206 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 RASGRP4Q8TDF6 673 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SREK1Q8WXA9 508 aaKnown RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SYTL4Q96C24 671 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 DRC1Q96MC2 740 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 FERD3LQ96RJ6 166 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 GMLQ99445 158 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SLC12A9Q9BXP2 914 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 ZCCHC4Q9H5U6 513 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 RTEL1Q9NZ71 1219 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 MBD1Q9UIS9 605 aaPredicted RBP2.38□□□□□ -2.03
PRPF39-208ENST00000554785 PCDHB10Q9UN67 800 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 PLA2G2DQ9UNK4 145 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 ZNF451Q9Y4E5 1061 aa2.38□□□□□ -2.03
PRPF39-208ENST00000554785 SSU72P8A0A1W2PR75 194 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 CBFA2T2O43439 604 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 FOXD2O60548 495 aaPredicted RBP2.37□□□□□ -2.03
PRPF39-208ENST00000554785 ATF4P18848 351 aaPredicted RBP2.37□□□□□ -2.03
PRPF39-208ENST00000554785 VIPR1P32241 457 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 PMS1P54277 932 aaKnown RBP2.37□□□□□ -2.03
PRPF39-208ENST00000554785 COL9A2Q14055 689 aaPredicted RBP2.37□□□□□ -2.03
PRPF39-208ENST00000554785 NFIXQ14938 502 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 SF3A1Q15459 793 aaKnown RBP2.37□□□□□ -2.03
PRPF39-208ENST00000554785 TCERG1LQ5VWI1 586 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 CCDC144CPQ8IYA2 1237 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 SEC16BQ96JE7 1060 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 FCRL2Q96LA5 508 aaPredicted RBP2.37□□□□□ -2.03
PRPF39-208ENST00000554785 JMJD8Q96S16 334 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 MCMBPQ9BTE3 642 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 TANGO6Q9C0B7 1094 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 TMPRSS5Q9H3S3 457 aa2.37□□□□□ -2.03
PRPF39-208ENST00000554785 GP6Q9HCN6 339 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms