RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 ANKRD45Q5TZF3 282 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 MFSD5Q6N075 450 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 CCDC129Q6ZRS4 1044 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 C16orf59Q7L2K0 433 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 STK11IPQ8N1F8 1099 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 DDX11Q96FC9 970 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 GLT1D1Q96MS3 346 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 SLF1Q9BQI6 1058 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 PPP1R12CQ9BZL4 782 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 PRDM12Q9H4Q4 367 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 SLC4A4Q9Y6R1 1079 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 SYNGAP1Q96PV0 1343 aa13.54□□□□□ -0.24
VPS33B-204ENST00000554660 MYH7P12883 1935 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 DNAJC25-GNG10A0A024R161 153 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 ASGR1P07306 291 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 ACRP10323 421 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 PPIGQ13427 754 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33B-204ENST00000554660 TMEM240Q5SV17 173 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 CTR9Q6PD62 1173 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 CLEC17AQ6ZS10 378 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 SIRT2Q8IXJ6 389 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 CPXCR1Q8N123 301 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 GAS2L1Q99501 681 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-204ENST00000554660 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33B-204ENST00000554660 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-204ENST00000554660 RAPGEFL1Q9UHV5 662 aa13.53□□□□□ -0.24
VPS33B-204ENST00000554660 FSD2A1L4K1 749 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 DUSP11O75319 330 aaKnown RBP13.52□□□□□ -0.25
VPS33B-204ENST00000554660 NDUFB10O96000 172 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 COL9A1P20849 921 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 CST5P28325 142 aaPredicted RBP13.52□□□□□ -0.25
VPS33B-204ENST00000554660 RASIP1Q5U651 963 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 MAMDC4Q6UXC1 1216 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 FAM126BQ8IXS8 530 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 MSL3Q8N5Y2 521 aaKnown RBP13.52□□□□□ -0.25
VPS33B-204ENST00000554660 FGD4Q96M96 766 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 PUS7LQ9H0K6 701 aaKnown RBP13.52□□□□□ -0.25
VPS33B-204ENST00000554660 THEGQ9P2T0 379 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 MROH7Q68CQ1 1323 aa13.52□□□□□ -0.25
VPS33B-204ENST00000554660 ELP1O95163 1332 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 F5H6K3 240 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 HMMRO75330 724 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 ATP5JP18859 108 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 RASA1P20936 1047 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 CDK7P50613 346 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 KLRC3Q07444 240 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 ACVR2BQ13705 512 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 ADGRE1Q14246 886 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 UBE3CQ15386 1083 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 SKOR2Q2VWA4 1001 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-204ENST00000554660 CCDC144BQ3MJ40 725 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 ZNF365Q70YC5 407 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 KIFC2Q96AC6 838 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 VTI1AQ96AJ9 217 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 HAUS7Q99871 368 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 RAVER2Q9HCJ3 691 aaKnown RBP13.51□□□□□ -0.25
VPS33B-204ENST00000554660 ARPP21Q9UBL0 812 aaPredicted RBP13.51□□□□□ -0.25
VPS33B-204ENST00000554660 MCM3APO60318 1980 aa13.51□□□□□ -0.25
VPS33B-204ENST00000554660 CHD7Q9P2D1 2997 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 LRRC37A2A6NM11 1700 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 A0A0U1RQG5 324 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 ARVCFO00192 962 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 PTGS1P23219 599 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 CYP2C18P33260 490 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 BEX3Q00994 111 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 RABEP1Q15276 862 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 CCDC85BQ15834 202 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 TTC22Q5TAA0 569 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 PSRC1Q6PGN9 363 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 CCDC174Q6PII3 467 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 ARMCX2Q7L311 632 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 ZNF467Q7Z7K2 595 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 TMEM199Q8N511 208 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 PCSK9Q8NBP7 692 aaKnown RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 GBP4Q96PP9 640 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 UPF3AQ9H1J1 476 aaKnown RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 SPC25Q9HBM1 224 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 HOMER2Q9NSB8 354 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 CXXC1Q9P0U4 656 aaPredicted RBP13.5□□□□□ -0.25
VPS33B-204ENST00000554660 XIRP2A4UGR9 3374 aa13.5□□□□□ -0.25
VPS33B-204ENST00000554660 GBF1Q92538 1859 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 UMODL1Q5DID0 1318 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.49□□□□□ -0.25
VPS33B-204ENST00000554660 K7ELQ4 463 aaPredicted RBP13.49□□□□□ -0.25
VPS33B-204ENST00000554660 ATP2A1O14983 1001 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 CTAGE5O15320 804 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 IGFBP4P22692 258 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 GJA9P57773 515 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 GNASQ5JWF2 1037 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 CASC1Q6TDU7 716 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 PLEKHM2Q8IWE5 1019 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 CCDC144CPQ8IYA2 1237 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 LRRC47Q8N1G4 583 aaKnown RBP13.49□□□□□ -0.25
VPS33B-204ENST00000554660 ANKRD35Q8N283 1001 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 PRPF38AQ8NAV1 312 aaKnown RBP13.49□□□□□ -0.25
VPS33B-204ENST00000554660 ADAMTS19Q8TE59 1207 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 ATXN2LQ8WWM7 1075 aaKnown RBP13.49□□□□□ -0.25
VPS33B-204ENST00000554660 ASB2Q96Q27 587 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 KIF2CQ99661 725 aa13.49□□□□□ -0.25
VPS33B-204ENST00000554660 NKX2-4Q9H2Z4 354 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms