RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 CCDC144BQ3MJ40 725 aa28.86■■■□□ 2.21
FOXA1-204ENST00000554607 CEP95Q96GE4 821 aa28.86■■■□□ 2.21
FOXA1-204ENST00000554607 UPF3AQ9H1J1 476 aaKnown RBP28.86■■■□□ 2.21
FOXA1-204ENST00000554607 MYADML2A6NDP7 307 aa28.85■■■□□ 2.21
FOXA1-204ENST00000554607 PATL2C9JE40 543 aaKnown RBP28.85■■■□□ 2.21
FOXA1-204ENST00000554607 GNASQ5JWF2 1037 aa28.85■■■□□ 2.21
FOXA1-204ENST00000554607 DIEXFQ68CQ4 756 aaKnown RBP28.85■■■□□ 2.21
FOXA1-204ENST00000554607 SYMPKQ92797 1274 aaKnown RBP28.85■■■□□ 2.21
FOXA1-204ENST00000554607 MYH4Q9Y623 1939 aa28.84■■■□□ 2.21
FOXA1-204ENST00000554607 PRUNE2Q8WUY3 3088 aa28.84■■■□□ 2.21
FOXA1-204ENST00000554607 A0A0U1RQG5 324 aaPredicted RBP28.84■■■□□ 2.21
FOXA1-204ENST00000554607 ARVCFO00192 962 aa28.84■■■□□ 2.21
FOXA1-204ENST00000554607 PRDM1O75626 825 aa28.84■■■□□ 2.21
FOXA1-204ENST00000554607 ARMCX2Q7L311 632 aa28.84■■■□□ 2.21
FOXA1-204ENST00000554607 NACAP1Q9BZK3 213 aa28.84■■■□□ 2.21
FOXA1-204ENST00000554607 EPB41L4AQ9HCS5 686 aaPredicted RBP28.84■■■□□ 2.21
FOXA1-204ENST00000554607 TLR3O15455 904 aaKnown RBP28.83■■■□□ 2.21
FOXA1-204ENST00000554607 BMP3P12645 472 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 PDE4BQ07343 736 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 GRIN2CQ14957 1233 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 SLFN13Q68D06 897 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 TMEM199Q8N511 208 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 FGD4Q96M96 766 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.83■■■□□ 2.215e-24■■□□□ 13.3
FOXA1-204ENST00000554607 CDH23Q9H251 3354 aa28.83■■■□□ 2.21
FOXA1-204ENST00000554607 VCANP13611 3396 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 SLC3A2P08195 630 aaKnown RBP28.82■■■□□ 2.2
FOXA1-204ENST00000554607 TSPY3P0CV98 308 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 TSPY8P0CW00 308 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 IFNL3Q8IZI9 196 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 LRRC47Q8N1G4 583 aaKnown RBP28.82■■■□□ 2.2
FOXA1-204ENST00000554607 NEDD1Q8NHV4 660 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 TIFAQ96CG3 184 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 ZNF576Q9H609 170 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 DCTPP1Q9H773 170 aa28.82■■■□□ 2.2
FOXA1-204ENST00000554607 ADCY6O43306 1168 aa28.81■■■□□ 2.2
FOXA1-204ENST00000554607 NKX3-2P78367 333 aa28.81■■■□□ 2.2
FOXA1-204ENST00000554607 CCDC144CPQ8IYA2 1237 aa28.81■■■□□ 2.2
FOXA1-204ENST00000554607 CHURC1Q8WUH1 139 aa28.81■■■□□ 2.2
FOXA1-204ENST00000554607 ACAD9Q9H845 621 aa28.81■■■□□ 2.2
FOXA1-204ENST00000554607 M0R2C6 588 aa28.8■■■□□ 2.2
FOXA1-204ENST00000554607 STAT2P52630 851 aa28.8■■■□□ 2.2
FOXA1-204ENST00000554607 IRX5P78411 483 aaPredicted RBP28.8■■■□□ 2.2
FOXA1-204ENST00000554607 PPP4R3BQ5MIZ7 849 aa28.8■■■□□ 2.2
FOXA1-204ENST00000554607 FAM160B2Q86V87 743 aa28.8■■■□□ 2.2
FOXA1-204ENST00000554607 HOMER2Q9NSB8 354 aa28.8■■■□□ 2.2
FOXA1-204ENST00000554607 PLIN4Q96Q06 1357 aa28.79■■■□□ 2.2
FOXA1-204ENST00000554607 TMEM232C9JQI7 657 aa28.79■■■□□ 2.2
FOXA1-204ENST00000554607 TMEM240Q5SV17 173 aa28.79■■■□□ 2.2
FOXA1-204ENST00000554607 FAM126BQ8IXS8 530 aa28.79■■■□□ 2.2
FOXA1-204ENST00000554607 KATNBL1Q9H079 304 aa28.79■■■□□ 2.2
FOXA1-204ENST00000554607 ISY1Q9ULR0 285 aaKnown RBP28.79■■■□□ 2.2
FOXA1-204ENST00000554607 MCM3APO60318 1980 aa28.79■■■□□ 2.2
FOXA1-204ENST00000554607 ASB14A6NK59 587 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 TNFAIP2Q03169 654 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 TKFCQ3LXA3 575 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 C20orf194Q5TEA3 1177 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 TSHZ3Q63HK5 1081 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 PSRC1Q6PGN9 363 aaPredicted RBP28.78■■■□□ 2.2
FOXA1-204ENST00000554607 CCDC129Q6ZRS4 1044 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 C16orf59Q7L2K0 433 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 FAM133AQ8N9E0 248 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 STAG1Q8WVM7 1258 aa28.78■■■□□ 2.2
FOXA1-204ENST00000554607 CABYRO75952 493 aa28.77■■■□□ 2.2
FOXA1-204ENST00000554607 CSF2RAP15509 400 aa28.77■■■□□ 2.2
FOXA1-204ENST00000554607 TFAP4Q01664 338 aa28.77■■■□□ 2.2
FOXA1-204ENST00000554607 CNTN2Q02246 1040 aa28.77■■■□□ 2.2
FOXA1-204ENST00000554607 RASIP1Q5U651 963 aa28.77■■■□□ 2.2
FOXA1-204ENST00000554607 NOL8Q76FK4 1167 aaKnown RBP28.77■■■□□ 2.2
FOXA1-204ENST00000554607 GMCL1Q96IK5 515 aa28.77■■■□□ 2.2
FOXA1-204ENST00000554607 SLC1A4P43007 532 aa28.76■■■□□ 2.19
FOXA1-204ENST00000554607 IKQ13123 557 aaPredicted RBP28.76■■■□□ 2.19
FOXA1-204ENST00000554607 SEZ6LQ9BYH1 1024 aa28.76■■■□□ 2.19
FOXA1-204ENST00000554607 PPP1R12CQ9BZL4 782 aa28.76■■■□□ 2.19
FOXA1-204ENST00000554607 NAPBQ9H115 298 aa28.76■■■□□ 2.19
FOXA1-204ENST00000554607 A1CFQ9NQ94 594 aaKnown RBP28.76■■■□□ 2.19
FOXA1-204ENST00000554607 RNF146Q9NTX7 359 aa28.76■■■□□ 2.19
FOXA1-204ENST00000554607 TTC41PQ6P2S7 1318 aa28.75■■■□□ 2.19
FOXA1-204ENST00000554607 ERC2O15083 957 aa28.75■■■□□ 2.19
FOXA1-204ENST00000554607 CTAGE5O15320 804 aa28.75■■■□□ 2.19
FOXA1-204ENST00000554607 PLA2G6O60733 806 aa28.75■■■□□ 2.19
FOXA1-204ENST00000554607 ZNF365Q70YC5 407 aa28.75■■■□□ 2.19
FOXA1-204ENST00000554607 GAS2L1Q99501 681 aaPredicted RBP28.75■■■□□ 2.19
FOXA1-204ENST00000554607 ZEB2O60315 1214 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 CD4P01730 458 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 PPARAQ07869 468 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 AGBL1Q96MI9 1066 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 TRERF1Q96PN7 1200 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 PBX4Q9BYU1 374 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 AP5M1Q9H0R1 490 aa28.74■■■□□ 2.19
FOXA1-204ENST00000554607 MTIF3Q9H2K0 278 aaKnown RBP28.74■■■□□ 2.19
FOXA1-204ENST00000554607 SOWAHBA6NEL2 793 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 ACRP10323 421 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 BEX3Q00994 111 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 TJAP1Q5JTD0 557 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 SLC43A3Q8NBI5 491 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 IL23AQ9NPF7 189 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 PRDM6Q9NQX0 595 aa28.73■■■□□ 2.19
FOXA1-204ENST00000554607 GNEQ9Y223 722 aaKnown RBP28.73■■■□□ 2.19
FOXA1-204ENST00000554607 ZNF536O15090 1300 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms