RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 FGAP02671 866 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 SNX17Q15036 470 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 CCDC96Q2M329 555 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 TRIM60Q495X7 471 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 RRP12Q5JTH9 1297 aaKnown RBP15.06■□□□□ 0
LINC00643-202ENST00000553426 KCTD1Q719H9 257 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 NUP133Q8WUM0 1156 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 CHMP4CQ96CF2 233 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 FAM227BQ96M60 508 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 TSEN34Q9BSV6 310 aaKnown RBP15.06■□□□□ 0
LINC00643-202ENST00000553426 INCENPQ9NQS7 918 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 IL17RBQ9NRM6 502 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 MTMR7Q9Y216 660 aa15.06■□□□□ 0
LINC00643-202ENST00000553426 A0A0D9SFI3 127 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 NMT2O60551 498 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 DUSP11O75319 330 aaKnown RBP15.05■□□□□ -0
LINC00643-202ENST00000553426 FGRP09769 529 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 HSPD1P10809 573 aaKnown RBP15.05■□□□□ -0
LINC00643-202ENST00000553426 PCP11498 1178 aaKnown RBP15.05■□□□□ -0
LINC00643-202ENST00000553426 NMIQ13287 307 aaPredicted RBP15.05■□□□□ -0
LINC00643-202ENST00000553426 ACVR2BQ13705 512 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 MFSD6Q6ZSS7 791 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 ARMCX2Q7L311 632 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 SMC5Q8IY18 1101 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 DEFB123Q8N688 67 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 DCAF4Q8WV16 495 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 TRERF1Q96PN7 1200 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 RNF146Q9NTX7 359 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.05■□□□□ -0
LINC00643-202ENST00000553426 TACC3Q9Y6A5 838 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 ZMYM6O95789 1325 aa15.05■□□□□ -0
LINC00643-202ENST00000553426 CCDC171Q6TFL3 1326 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 A0A1W2PQ45 241 aaPredicted RBP15.04■□□□□ -0
LINC00643-202ENST00000553426 A0A1W2PQY0 241 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 MOXD2PA6NHM9 499 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 ASB14A6NK59 587 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 TOP1P11387 765 aaKnown RBP15.04■□□□□ -0
LINC00643-202ENST00000553426 ALAS1P13196 640 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 TLE2Q04725 743 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 CCDC174Q6PII3 467 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 CHD1LQ86WJ1 897 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 PCSK9Q8NBP7 692 aaKnown RBP15.04■□□□□ -0
LINC00643-202ENST00000553426 AGBL1Q96MI9 1066 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 RNF41Q9H4P4 317 aaPredicted RBP15.04■□□□□ -0
LINC00643-202ENST00000553426 STARD7Q9NQZ5 370 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 SMCHD1A6NHR9 2005 aa15.04■□□□□ -0
LINC00643-202ENST00000553426 VCANP13611 3396 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 SYNRGQ9UMZ2 1314 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 DCDC2CA8MYV0 355 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 ADAMTS4O75173 837 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 CLTBP09497 229 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 C6orf222P0C671 652 aaPredicted RBP15.03■□□□□ -0
LINC00643-202ENST00000553426 CCDC144BQ3MJ40 725 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 NOL8Q76FK4 1167 aaKnown RBP15.03■□□□□ -0
LINC00643-202ENST00000553426 CCDC144CPQ8IYA2 1237 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 VTI1AQ96AJ9 217 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 LENG1Q96BZ8 264 aaPredicted RBP15.03■□□□□ -0
LINC00643-202ENST00000553426 PDLIM7Q9NR12 457 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 DIAPH3Q9NSV4 1193 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 TCP11L1Q9NUJ3 509 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 PNMA2Q9UL42 364 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 CCPG1Q9ULG6 757 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 PRR12Q9ULL5 1215 aa15.03■□□□□ -0
LINC00643-202ENST00000553426 ZNF536O15090 1300 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 HIP1O00291 1037 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 PQBP1O60828 265 aaKnown RBP15.02■□□□□ -0
LINC00643-202ENST00000553426 SDSP20132 328 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 ACLYP53396 1101 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 HAND2P61296 217 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 NUCB1Q02818 461 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 AKNAD1Q5T1N1 836 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 ZNF589Q86UQ0 364 aaPredicted RBP15.02■□□□□ -0
LINC00643-202ENST00000553426 FAM133AQ8N9E0 248 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 BADQ92934 168 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 GLT1D1Q96MS3 346 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 TTC14Q96N46 770 aa15.02■□□□□ -0
LINC00643-202ENST00000553426 A1CFQ9NQ94 594 aaKnown RBP15.02■□□□□ -0
LINC00643-202ENST00000553426 SPTBN5Q9NRC6 3674 aaKnown RBP15.02□□□□□ -0.01
LINC00643-202ENST00000553426 CUL9Q8IWT3 2517 aa15.02□□□□□ -0.01
LINC00643-202ENST00000553426 MROH7Q68CQ1 1323 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 ICAM1P05362 532 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 RAG1P15918 1043 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 NOVP48745 357 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 NT5C2P49902 561 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 CNTN2Q02246 1040 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 KCNA10Q16322 511 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 GNASQ5JWF2 1037 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 NSMFQ6X4W1 530 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 PLEKHM2Q8IWE5 1019 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 KLHDC9Q8NEP7 349 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 ESR2Q92731 530 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 TOX2Q96NM4 488 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 TMEM47Q9BQJ4 181 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 OSBPL3Q9H4L5 887 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 TMEM39AQ9NV64 488 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 MTMR10Q9NXD2 777 aa15.01□□□□□ -0.01
LINC00643-202ENST00000553426 ELP1O95163 1332 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 TRIM43BA6NCK2 446 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 ZNF213O14771 459 aa15□□□□□ -0.01
LINC00643-202ENST00000553426 CST5P28325 142 aaPredicted RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms