RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ORC2Q13416 577 aaPredicted RBP29.95■■■□□ 2.38
CCDC88C-205ENST00000553403 RBM26Q5T8P6 1007 aaKnown RBP29.95■■■□□ 2.38
CCDC88C-205ENST00000553403 PDILTQ8N807 584 aa29.95■■■□□ 2.38
CCDC88C-205ENST00000553403 ZBTB12Q9Y330 459 aaPredicted RBP29.95■■■□□ 2.38
CCDC88C-205ENST00000553403 FOXN1O15353 648 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 IL17AQ16552 155 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 SLFN13Q68D06 897 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 TTBK2Q6IQ55 1244 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 SIAH1Q8IUQ4 282 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 TRIML1Q8N9V2 468 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 TAOK3Q9H2K8 898 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 SYNPO2Q9UMS6 1093 aa29.94■■■□□ 2.38
CCDC88C-205ENST00000553403 A0A087X0B3 334 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 TCP10L2B9ZVM9 353 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 IKBKBO14920 756 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 PRPHP41219 470 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 ADCY7P51828 1080 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 SH3RF1Q7Z6J0 888 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 REXO1Q8N1G1 1221 aaKnown RBP29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 GMCL1P1Q8NEA9 526 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 DHX58Q96C10 678 aa29.93■■■□□ 2.38
CCDC88C-205ENST00000553403 BRCA1P38398 1863 aaKnown RBP29.92■■■□□ 2.38
CCDC88C-205ENST00000553403 MMP14P50281 582 aa29.92■■■□□ 2.38
CCDC88C-205ENST00000553403 TPM4P67936 248 aa29.92■■■□□ 2.38
CCDC88C-205ENST00000553403 CXCL9Q07325 125 aa29.92■■■□□ 2.38
CCDC88C-205ENST00000553403 SMARCE1Q969G3 411 aa29.92■■■□□ 2.38
CCDC88C-205ENST00000553403 FER1L6Q2WGJ9 1857 aa29.92■■■□□ 2.38
CCDC88C-205ENST00000553403 CLRN2A0PK11 232 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 ZBTB5O15062 677 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 GDF11O95390 407 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 SHROOM1Q2M3G4 852 aaPredicted RBP29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 CIAPIN1Q6FI81 312 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 KCTD1Q719H9 257 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 SPATA20Q8TB22 786 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 COA7Q96BR5 231 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 MAN1B1Q9UKM7 699 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 GOLGB1Q14789 3259 aaKnown RBP29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 SMC2O95347 1197 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 PRR29P0C7W0 189 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 SLC1A4P43007 532 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 DTHD1Q6ZMT9 781 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 NEK8Q86SG6 692 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 MRFAP1L1Q96HT8 127 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 ZBED3Q96IU2 234 aaPredicted RBP29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 CNTNAP1P78357 1384 aa29.91■■■□□ 2.38
CCDC88C-205ENST00000553403 IQUBQ8NA54 791 aa29.9■■■□□ 2.38
CCDC88C-205ENST00000553403 GMCL1Q96IK5 515 aa29.9■■■□□ 2.38
CCDC88C-205ENST00000553403 RIC8AQ9NPQ8 531 aa29.9■■■□□ 2.38
CCDC88C-205ENST00000553403 USP17L10C9JJH3 530 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 GH2P01242 217 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 TXLNAP40222 546 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 ISM2Q6H9L7 571 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 FAM83AQ86UY5 434 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 JDP2Q8WYK2 163 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 PAGE5Q96GU1 130 aa29.89■■■□□ 2.38
CCDC88C-205ENST00000553403 ZNF500O60304 480 aaPredicted RBP29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 SLC16A2P36021 539 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 NCAPHQ15003 741 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 ZNF784Q8NCA9 323 aaPredicted RBP29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 TMEM60Q9H2L4 133 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 BIN2Q9UBW5 565 aaPredicted RBP29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 F5H6K3 240 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 PPP1R11O60927 126 aaPredicted RBP29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 KLRC3Q07444 240 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 MORC3Q14149 939 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 E2F4Q16254 413 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 TBCKQ8TEA7 893 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 DACH1Q9UI36 760 aa29.88■■■□□ 2.37
CCDC88C-205ENST00000553403 MYO1BO43795 1136 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 TBC1D12O60347 775 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 RRP1BQ14684 758 aaKnown RBP29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 TNIP1Q15025 636 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 JAKMIP3Q5VZ66 844 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 MLKLQ8NB16 471 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 SPC24Q8NBT2 197 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 GLT8D2Q9H1C3 349 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 ARFGEF1Q9Y6D6 1849 aa29.87■■■□□ 2.37
CCDC88C-205ENST00000553403 JAG1P78504 1218 aa29.86■■■□□ 2.37
CCDC88C-205ENST00000553403 LETM2Q2VYF4 491 aa29.86■■■□□ 2.37
CCDC88C-205ENST00000553403 GRAMD1CQ8IYS0 662 aa29.86■■■□□ 2.37
CCDC88C-205ENST00000553403 NFKBIEO00221 500 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 MRPL12P52815 198 aaKnown RBP29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 CUL5Q93034 780 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 LTBP3Q9NS15 1303 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 NEMFO60524 1076 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 CCNT1O60563 726 aaKnown RBP29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 NDUFB10O96000 172 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 OR52Z1P0C646 297 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 BMP6P22004 513 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 CLK2P49760 499 aaKnown RBP29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 MYL5Q02045 173 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 CT47A1Q5JQC4 288 aaPredicted RBP29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 DRC7Q8IY82 874 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 AK8Q96MA6 479 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 CCSER1Q9C0I3 900 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 VEZTQ9HBM0 779 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 TMEM260Q9NX78 707 aa29.85■■■□□ 2.37
CCDC88C-205ENST00000553403 DPYDQ12882 1025 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms