RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 PLD2O14939 933 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 RFPL3O75679 317 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 FOSL1P15407 271 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 BMP8BP34820 402 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 NOP2P46087 812 aaKnown RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 GFRA1P56159 465 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 SUMO1P63165 101 aaKnown RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 CYP4F3Q08477 520 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 MAP4K2Q12851 820 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 SF1Q15637 639 aaKnown RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 IFI16Q16666 785 aaKnown RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 CWF19L1Q69YN2 538 aaKnown RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 USHBP1Q8N6Y0 703 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 LINC00116Q8NCU8 138 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 NETO1Q8TDF5 533 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 NCOA5Q9HCD5 579 aaKnown RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 GPR55Q9Y2T6 319 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-205ENST00000550592 PRKAB1Q9Y478 270 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 CD2APQ9Y5K6 639 aa7.07□□□□□ -1.28
LIMA1-205ENST00000550592 CUX2O14529 1486 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 CC2D2AQ9P2K1 1620 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 TMEM265A0A087WTH1 108 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 CPP00450 1065 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 VAV1P15498 845 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 TPP2P29144 1249 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 FNDC3BQ53EP0 1204 aaKnown RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 DALRD3Q5D0E6 543 aaKnown RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 TAF7LQ5H9L4 462 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 CRTC3Q6UUV7 619 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 PLD6Q8N2A8 252 aaKnown RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 KCTD13Q8WZ19 329 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 COPS5Q92905 334 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 UBE2FQ969M7 185 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 FCRL3Q96P31 734 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 MCMBPQ9BTE3 642 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 MRPL4Q9BYD3 311 aaKnown RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 ZSWIM5Q9P217 1185 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 ZC3H7BQ9UGR2 993 aaKnown RBP7.06□□□□□ -1.28
LIMA1-205ENST00000550592 PLAAQ9Y263 795 aa7.06□□□□□ -1.28
LIMA1-205ENST00000550592 WASH4PA8MWX3 477 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 H3BS24 57 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 AURKAO14965 403 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 KCNQ2O43526 872 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 IGHA1P01876 353 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 SNRPB2P08579 225 aaKnown RBP7.05□□□□□ -1.28
LIMA1-205ENST00000550592 CBX2Q14781 532 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-205ENST00000550592 DPY19L1Q2PZI1 675 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 SLC35F1Q5T1Q4 408 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 RNF187Q5TA31 235 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-205ENST00000550592 TMPRSS7Q7RTY8 843 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 TMEM145Q8NBT3 493 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 C1orf159Q96HA4 380 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 SLC12A9Q9BXP2 914 aa7.05□□□□□ -1.28
LIMA1-205ENST00000550592 PITPNM2Q9BZ72 1349 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 ZNF205O95201 554 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 CD3EP07766 207 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 C6orf222P0C671 652 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-205ENST00000550592 PCBP3P57721 371 aaKnown RBP7.04□□□□□ -1.28
LIMA1-205ENST00000550592 SCRN1Q12765 414 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 RNF111Q6ZNA4 994 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 KREMEN2Q8NCW0 462 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 NINJ1Q92982 152 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 RNF112Q9ULX5 631 aa7.04□□□□□ -1.28
LIMA1-205ENST00000550592 C2orf71A6NGG8 1288 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 RAPGEF3O95398 923 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 ECI1P42126 302 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 KCNJ6P48051 423 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 MASP1P48740 699 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 PABPC4Q13310 644 aaKnown RBP eCLIP7.03□□□□□ -1.28
LIMA1-205ENST00000550592 NTRK3Q16288 839 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 RTP2Q5QGT7 225 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 DENND5AQ6IQ26 1287 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 RCSD1Q6JBY9 416 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 CLUHP3Q96NS8 147 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 SPC25Q9HBM1 224 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 IFT57Q9NWB7 429 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 VAV3Q9UKW4 847 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 TCFL5Q9UL49 500 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 BACE2Q9Y5Z0 518 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 NACADO15069 1562 aa7.03□□□□□ -1.28
LIMA1-205ENST00000550592 STXBP3O00186 592 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 DNAJC6O75061 913 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 ESR1P03372 595 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 SYPP08247 313 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 IFNGR1P15260 489 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 HOXA10P31260 410 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-205ENST00000550592 GABREP78334 506 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 TESK1Q15569 626 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 C21orf62-AS1Q17RA5 79 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 FILIP1Q7Z7B0 1213 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 NIM1KQ8IY84 436 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 NPLOC4Q8TAT6 608 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 FRS2Q8WU20 508 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 PTPRN2Q92932 1015 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 FOXP3Q9BZS1 431 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 DUSP13Q9UII6 198 aa7.02□□□□□ -1.29
LIMA1-205ENST00000550592 SSU72P8A0A1W2PR75 194 aa7.01□□□□□ -1.29
LIMA1-205ENST00000550592 THBDP07204 575 aa7.01□□□□□ -1.29
LIMA1-205ENST00000550592 ENDOUP21128 410 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms