RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SMARCA1P28370 1054 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 PLS1Q14651 629 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 NTRK3Q16288 839 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 TMX3Q96JJ7 454 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 PIGSQ96S52 555 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 RAVER2Q9HCJ3 691 aaKnown RBP24.59■■□□□ 1.53
VPS29-206ENST00000549578 SH2B1Q9NRF2 756 aaPredicted RBP24.59■■□□□ 1.53
VPS29-206ENST00000549578 TSKSQ9UJT2 592 aa24.59■■□□□ 1.53
VPS29-206ENST00000549578 ZNF214Q9UL59 606 aaPredicted RBP24.59■■□□□ 1.53
VPS29-206ENST00000549578 hCG_1642624A0A1W2PR95 340 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 FDX1P10109 184 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 ERVK-9P63128 1117 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 ERVK-24P63145 666 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 QRICH1Q2TAL8 776 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 Q3C1V9 767 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 CCDC83Q8IWF9 413 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 PHKBQ93100 1093 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 MTMR8Q96EF0 704 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 MORF4L1Q9UBU8 362 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 ZNF536O15090 1300 aa24.58■■□□□ 1.53
VPS29-206ENST00000549578 TAL1P17542 331 aaPredicted RBP24.57■■□□□ 1.52
VPS29-206ENST00000549578 FAM110CQ1W6H9 321 aa24.57■■□□□ 1.52
VPS29-206ENST00000549578 GPRC5AQ8NFJ5 357 aa24.57■■□□□ 1.52
VPS29-206ENST00000549578 IFNAR1P17181 557 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 SLC4A3P48751 1232 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 RRP36Q96EU6 259 aaKnown RBP24.56■■□□□ 1.52
VPS29-206ENST00000549578 AGBL1Q96MI9 1066 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 SPATC1LQ9H0A9 340 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 ZBTB5O15062 677 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 CTDNEP1O95476 244 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 SNRNP48Q6IEG0 339 aaKnown RBP24.56■■□□□ 1.52
VPS29-206ENST00000549578 CPLX2Q6PUV4 134 aaKnown RBP24.56■■□□□ 1.52
VPS29-206ENST00000549578 SNX21Q969T3 373 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 TEX13BQ9BXU2 312 aa24.56■■□□□ 1.52
VPS29-206ENST00000549578 V9GY48 417 aaPredicted RBP24.56■■□□□ 1.52
VPS29-206ENST00000549578 MYH6P13533 1939 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 ATP2A1O14983 1001 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 PPP1R11O60927 126 aaPredicted RBP24.55■■□□□ 1.52
VPS29-206ENST00000549578 ICAM1P05362 532 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 STAT3P40763 770 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 OAZ1P54368 228 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 SLC26A6Q9BXS9 759 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 MOV10L1Q9BXT6 1211 aaKnown RBP24.55■■□□□ 1.52
VPS29-206ENST00000549578 CCPG1Q9ULG6 757 aa24.55■■□□□ 1.52
VPS29-206ENST00000549578 PNMA6FA0A0J9YX94 578 aa24.54■■□□□ 1.52
VPS29-206ENST00000549578 ECM2O94769 699 aaPredicted RBP24.54■■□□□ 1.52
VPS29-206ENST00000549578 SEC63Q9UGP8 760 aaKnown RBP24.54■■□□□ 1.52
VPS29-206ENST00000549578 RIPK3Q9Y572 518 aa24.54■■□□□ 1.52
VPS29-206ENST00000549578 SMCHD1A6NHR9 2005 aa24.53■■□□□ 1.52
VPS29-206ENST00000549578 GPR25O00155 361 aa24.53■■□□□ 1.52
VPS29-206ENST00000549578 CDKL5O76039 1030 aa24.53■■□□□ 1.52
VPS29-206ENST00000549578 USH1GQ495M9 461 aa24.53■■□□□ 1.52
VPS29-206ENST00000549578 FBXO11Q86XK2 927 aa24.53■■□□□ 1.52
VPS29-206ENST00000549578 NSUN7Q8NE18 718 aaKnown RBP24.53■■□□□ 1.52
VPS29-206ENST00000549578 PORCNQ9H237 461 aa24.53■■□□□ 1.52
VPS29-206ENST00000549578 K7ELQ4 463 aaPredicted RBP24.52■■□□□ 1.52
VPS29-206ENST00000549578 JAK2O60674 1132 aa24.52■■□□□ 1.52
VPS29-206ENST00000549578 RIOX2Q8IUF8 465 aa24.52■■□□□ 1.52
VPS29-206ENST00000549578 HSCBQ8IWL3 235 aa24.52■■□□□ 1.52
VPS29-206ENST00000549578 RNF26Q9BY78 433 aaPredicted RBP24.52■■□□□ 1.52
VPS29-206ENST00000549578 HOMER2Q9NSB8 354 aa24.52■■□□□ 1.52
VPS29-206ENST00000549578 PRPF3O43395 683 aaKnown RBP24.51■■□□□ 1.51
VPS29-206ENST00000549578 FMNL1O95466 1100 aaPredicted RBP24.51■■□□□ 1.51
VPS29-206ENST00000549578 ALAS1P13196 640 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 CCNA1P78396 465 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 AKAP17AQ02040 695 aaKnown RBP24.51■■□□□ 1.51
VPS29-206ENST00000549578 SSRP1Q08945 709 aaKnown RBP24.51■■□□□ 1.51
VPS29-206ENST00000549578 TRIM22Q8IYM9 498 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 AMNQ9BXJ7 453 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 EFCC1Q9HA90 598 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 PTPDC1A2A3K4 754 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 HSPA1AP0DMV8 641 aaKnown RBP24.51■■□□□ 1.51
VPS29-206ENST00000549578 HSPA1BP0DMV9 641 aaKnown RBP24.51■■□□□ 1.51
VPS29-206ENST00000549578 ERCC3P19447 782 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 SP3Q02447 781 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 NCAPG2Q86XI2 1143 aa24.51■■□□□ 1.51
VPS29-206ENST00000549578 GPKOWQ92917 476 aaPredicted RBP eCLIP24.51■■□□□ 1.51
VPS29-206ENST00000549578 FOXN1O15353 648 aa24.5■■□□□ 1.51
VPS29-206ENST00000549578 PKN1Q16512 942 aa24.5■■□□□ 1.51
VPS29-206ENST00000549578 WDR78Q5VTH9 848 aa24.5■■□□□ 1.51
VPS29-206ENST00000549578 COA7Q96BR5 231 aa24.5■■□□□ 1.51
VPS29-206ENST00000549578 DDX11Q96FC9 970 aa24.5■■□□□ 1.51
VPS29-206ENST00000549578 PCDHA1Q9Y5I3 950 aa24.5■■□□□ 1.51
VPS29-206ENST00000549578 SLC25A27O95847 323 aa24.49■■□□□ 1.51
VPS29-206ENST00000549578 LACTBP83111 547 aaPredicted RBP24.49■■□□□ 1.51
VPS29-206ENST00000549578 HEATR3Q7Z4Q2 680 aa24.49■■□□□ 1.51
VPS29-206ENST00000549578 CCAR1Q8IX12 1150 aaKnown RBP24.49■■□□□ 1.51
VPS29-206ENST00000549578 ZNF296Q8WUU4 475 aaPredicted RBP24.49■■□□□ 1.51
VPS29-206ENST00000549578 RNF146Q9NTX7 359 aa24.49■■□□□ 1.51
VPS29-206ENST00000549578 RBM27Q9P2N5 1060 aaKnown RBP24.49■■□□□ 1.51
VPS29-206ENST00000549578 ZSWIM8A7E2V4 1837 aa24.49■■□□□ 1.51
VPS29-206ENST00000549578 CTGFP29279 349 aa24.48■■□□□ 1.51
VPS29-206ENST00000549578 PFKFB3Q16875 520 aaPredicted RBP24.48■■□□□ 1.51
VPS29-206ENST00000549578 NOM1Q5C9Z4 860 aaKnown RBP24.48■■□□□ 1.51
VPS29-206ENST00000549578 MUM1L1Q5H9M0 696 aa24.48■■□□□ 1.51
VPS29-206ENST00000549578 WWC2Q6AWC2 1192 aa24.48■■□□□ 1.51
VPS29-206ENST00000549578 SHCBP1Q8NEM2 672 aa24.48■■□□□ 1.51
VPS29-206ENST00000549578 TRERF1Q96PN7 1200 aa24.48■■□□□ 1.51
VPS29-206ENST00000549578 LLPHQ9BRT6 129 aaKnown RBP24.48■■□□□ 1.51
VPS29-206ENST00000549578 ARHGAP39Q9C0H5 1083 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms