RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ZNF16P17020 682 aaPredicted RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 DEKP35659 375 aaKnown RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 AK2P54819 239 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 CHAF1AQ13111 956 aaPredicted RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 COL9A3Q14050 684 aaPredicted RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 NAA30Q147X3 362 aaPredicted RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 SUZ12Q15022 739 aaKnown RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.93□□□□□ -0.82
VPS29-203ENST00000546588 CAPN12Q6ZSI9 719 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 Q6ZVU0 165 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 ILDR2Q71H61 639 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 TEX2Q8IWB9 1127 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 NANOS1Q8WY41 292 aaKnown RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 ZSCAN31Q96LW9 406 aaPredicted RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 UPF3BQ9BZI7 483 aaKnown RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 CRNKL1Q9BZJ0 848 aaKnown RBP9.93□□□□□ -0.82
VPS29-203ENST00000546588 NAPBQ9H115 298 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 CNNM2Q9H8M5 875 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS29-203ENST00000546588 DAGLAQ9Y4D2 1042 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 SLC4A4Q9Y6R1 1079 aa9.93□□□□□ -0.82
VPS29-203ENST00000546588 ATRNL1Q5VV63 1379 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 SCN4AP35499 1836 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 ERVH48-1M5A8F1 160 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 ORC4O43929 436 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 IARSP41252 1262 aaKnown RBP9.92□□□□□ -0.82
VPS29-203ENST00000546588 RCAN1P53805 252 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 AOC3Q16853 763 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 INTS6LQ5JSJ4 861 aaKnown RBP9.92□□□□□ -0.82
VPS29-203ENST00000546588 AKNAD1Q5T1N1 836 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 TBC1D10CQ8IV04 446 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 MIGA1Q8NAN2 632 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 NCOA7Q8NI08 942 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 TMX3Q96JJ7 454 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 TAOK3Q9H2K8 898 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 ZNF358Q9NW07 568 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 LIMCH1Q9UPQ0 1083 aa9.92□□□□□ -0.82
VPS29-203ENST00000546588 DNMT3AQ9Y6K1 912 aaPredicted RBP9.92□□□□□ -0.82
VPS29-203ENST00000546588 NEDD4P46934 1319 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 TTLL8A6PVC2 850 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 PPIP5K2O43314 1243 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 PRKAB2O43741 272 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 WEE1P30291 646 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 BTDP43251 543 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 ANTXR2P58335 489 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 DYNLL1P63167 89 aaKnown RBP9.91□□□□□ -0.82
VPS29-203ENST00000546588 SETQ01105 290 aaPredicted RBP9.91□□□□□ -0.82
VPS29-203ENST00000546588 PTSQ03393 145 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 PPARAQ07869 468 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 CTR9Q6PD62 1173 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 SGMS1Q86VZ5 419 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 AGBL3Q8NEM8 1001 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 SDR42E1Q8WUS8 393 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 PLCD4Q9BRC7 762 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 IDI2Q9BXS1 227 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 RNF41Q9H4P4 317 aaPredicted RBP9.91□□□□□ -0.82
VPS29-203ENST00000546588 DBNDD1Q9H9R9 158 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 CWC22Q9HCG8 908 aaKnown RBP9.91□□□□□ -0.82
VPS29-203ENST00000546588 PDRG1Q9NUG6 133 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 AATFQ9NY61 560 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS29-203ENST00000546588 TACC3Q9Y6A5 838 aa9.91□□□□□ -0.82
VPS29-203ENST00000546588 GOLGB1Q14789 3259 aaKnown RBP9.91□□□□□ -0.82
VPS29-203ENST00000546588 TCHHQ07283 1943 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 FLT1P17948 1338 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 FZD9O00144 591 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 STAU1O95793 577 aaKnown RBP9.9□□□□□ -0.82
VPS29-203ENST00000546588 MCM5P33992 734 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 LIFRP42702 1097 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 NOVP48745 357 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 ST3GAL1Q11201 340 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 C12orf60Q5U649 245 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 APOBEC3HQ6NTF7 200 aaKnown RBP9.9□□□□□ -0.82
VPS29-203ENST00000546588 CLEC17AQ6ZS10 378 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 METTL16Q86W50 562 aaKnown RBP9.9□□□□□ -0.82
VPS29-203ENST00000546588 TEKT1Q969V4 418 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 ZNF274Q96GC6 653 aaPredicted RBP9.9□□□□□ -0.82
VPS29-203ENST00000546588 ZBED3Q96IU2 234 aaPredicted RBP9.9□□□□□ -0.82
VPS29-203ENST00000546588 TMEM87BQ96K49 555 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 KRT23Q9C075 422 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 KIAA1522Q9P206 1035 aaPredicted RBP9.9□□□□□ -0.82
VPS29-203ENST00000546588 ZNRF3Q9ULT6 936 aa9.9□□□□□ -0.82
VPS29-203ENST00000546588 SPINT1O43278 529 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 WDHD1O75717 1129 aaPredicted RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 RPS12P25398 132 aaKnown RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 TDO2P48775 406 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 GABPAQ06546 454 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 FKBP1CQ5VVH2 108 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 NPAS4Q8IUM7 802 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 NLGN2Q8NFZ4 835 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 SH3RF3Q8TEJ3 882 aaPredicted RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 SCG3Q8WXD2 468 aaKnown RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 VTI1AQ96AJ9 217 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 NOL10Q9BSC4 688 aaKnown RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 EHD4Q9H223 541 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 CYLDQ9NQC7 956 aa9.89□□□□□ -0.83
VPS29-203ENST00000546588 NAP1L2Q9ULW6 460 aaPredicted RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 TTF2Q9UNY4 1162 aaKnown RBP9.89□□□□□ -0.83
VPS29-203ENST00000546588 WDR90Q96KV7 1748 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 DOCK1Q14185 1865 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 M0R2N6 131 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms