RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 TAF3Q5VWG9 929 aa17.75■□□□□ 0.43
LDLR-204ENST00000545707 MSANTD4Q8NCY6 345 aa17.75■□□□□ 0.43
LDLR-204ENST00000545707 HPS3Q969F9 1004 aa17.75■□□□□ 0.43
LDLR-204ENST00000545707 ADAM21Q9UKJ8 722 aa17.75■□□□□ 0.43
LDLR-204ENST00000545707 RAB21Q9UL25 225 aa17.75■□□□□ 0.43
LDLR-204ENST00000545707 LGALS16A8MUM7 142 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 TSPY3P0CV98 308 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 TSPY8P0CW00 308 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 ZNF507Q8TCN5 953 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 TGFBRAP1Q8WUH2 860 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 HERVK_113P62684 666 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 AMPD2Q01433 879 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 TRIM14Q14142 442 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 DGKHQ86XP1 1220 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 GPIHBP1Q8IV16 184 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 CDCA7Q9BWT1 371 aaPredicted RBP17.74■□□□□ 0.43
LDLR-204ENST00000545707 MKRN1Q9UHC7 482 aaKnown RBP17.74■□□□□ 0.43
LDLR-204ENST00000545707 L1RE1Q9UN81 338 aa17.74■□□□□ 0.43
LDLR-204ENST00000545707 COL16A1Q07092 1604 aaPredicted RBP17.73■□□□□ 0.43
LDLR-204ENST00000545707 STXBP3O00186 592 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 GRM4Q14833 912 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 LETM2Q2VYF4 491 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 SLC10A5Q5PT55 438 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 SETDB2Q96T68 719 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 DUSP9Q99956 384 aaKnown RBP17.73■□□□□ 0.43
LDLR-204ENST00000545707 SCN7AQ01118 1682 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 ATP1A1P05023 1023 aaKnown RBP17.73■□□□□ 0.43
LDLR-204ENST00000545707 FCER1AP12319 257 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 PLCG1P19174 1290 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 TXNRD1Q16881 649 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 WHAMMP3Q1A5X7 153 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 TTI2Q6NXR4 508 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 MAPKAPK5Q8IW41 473 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 HNRNPLLQ8WVV9 542 aaKnown RBP17.73■□□□□ 0.43
LDLR-204ENST00000545707 CAPZA3Q96KX2 299 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 TMEM47Q9BQJ4 181 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 VAT1LQ9HCJ6 419 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 KBTBD4Q9NVX7 518 aa17.73■□□□□ 0.43
LDLR-204ENST00000545707 RCCD1A6NED2 376 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 RASSF10A6NK89 507 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 STK4Q13043 487 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 CCDC178Q5BJE1 867 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 CCDC122Q5T0U0 273 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 HDXQ7Z353 690 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 CSGALNACT2Q8N6G5 542 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 GIMAP8Q8ND71 665 aaPredicted RBP17.72■□□□□ 0.43
LDLR-204ENST00000545707 SMARCC1Q92922 1105 aaPredicted RBP17.72■□□□□ 0.43
LDLR-204ENST00000545707 TUBGCP2Q9BSJ2 902 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 SH3GLB2Q9NR46 395 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 CALCOCO1Q9P1Z2 691 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 VPS18Q9P253 973 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 DUSP10Q9Y6W6 482 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 DLEC1Q9Y238 1755 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 PSMA7O14818 248 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 CCNT1O60563 726 aaKnown RBP17.72■□□□□ 0.43
LDLR-204ENST00000545707 PHACTR2O75167 634 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 LMAN1P49257 510 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 ANKRD40Q6AI12 368 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 AMIGO3Q86WK7 504 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 ZNF444Q8N0Y2 327 aaPredicted RBP17.72■□□□□ 0.43
LDLR-204ENST00000545707 DNAJC7Q99615 494 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 LACRTQ9GZZ8 138 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 BARHL2Q9NY43 387 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 MAGEC2Q9UBF1 373 aaPredicted RBP17.72■□□□□ 0.43
LDLR-204ENST00000545707 CAPN11Q9UMQ6 739 aa17.72■□□□□ 0.43
LDLR-204ENST00000545707 RHOBTB3O94955 611 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 LDHBP07195 334 aaKnown RBP17.71■□□□□ 0.43
LDLR-204ENST00000545707 PIP4K2BP78356 416 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 CABP7Q86V35 215 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 PCMTD1Q96MG8 357 aaPredicted RBP17.71■□□□□ 0.43
LDLR-204ENST00000545707 MMS19Q96T76 1030 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 ANKRD2Q9GZV1 360 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 ANKIB1Q9P2G1 1089 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 PDS5AQ29RF7 1337 aaKnown RBP17.71■□□□□ 0.43
LDLR-204ENST00000545707 LAMB2P55268 1798 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 TRIM21P19474 475 aaKnown RBP17.71■□□□□ 0.43
LDLR-204ENST00000545707 EEF1GP26641 437 aaKnown RBP17.71■□□□□ 0.43
LDLR-204ENST00000545707 TECP42680 631 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 CYP27A1Q02318 531 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 PDE4DQ08499 809 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 STIM1Q13586 685 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 TUBB2AQ13885 445 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 KCNB1Q14721 858 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 TSR1Q2NL82 804 aaKnown RBP17.71■□□□□ 0.43
LDLR-204ENST00000545707 HINFPQ9BQA5 517 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 TUBB2BQ9BVA1 445 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 MYO1AQ9UBC5 1043 aa17.71■□□□□ 0.43
LDLR-204ENST00000545707 KLRF2D3W0D1 207 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 ERLIN1O75477 346 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 ERCC3P19447 782 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 TM4SF1P30408 202 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 TBC1D8BQ0IIM8 1120 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 USP17L2Q6R6M4 530 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 CCSER1Q9C0I3 900 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 THAP9Q9H5L6 903 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 THRAP3Q9Y2W1 955 aaKnown RBP17.7■□□□□ 0.42
LDLR-204ENST00000545707 POTEB2H3BUK9 544 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 ZMYND10O75800 440 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 FLT1P17948 1338 aa17.7■□□□□ 0.42
LDLR-204ENST00000545707 NAPAP54920 295 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms