RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 ITIH6Q6UXX5 1313 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 TRIM37O94972 964 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 CCT6AP40227 531 aaKnown RBP20.32■□□□□ 0.84
VIM-209ENST00000544301 GABPAQ06546 454 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 SPAG1Q07617 926 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 PICALMQ13492 652 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 LETM2Q2VYF4 491 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 SOGA3Q5TF21 947 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 UBA5Q9GZZ9 404 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 RIOX1Q9H6W3 641 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 KBTBD4Q9NVX7 518 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 MAPK8IP1Q9UQF2 711 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 CCNT1O60563 726 aaKnown RBP20.32■□□□□ 0.84
VIM-209ENST00000544301 MYL1P05976 194 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 OR52Z1P0C646 297 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 KCNB1Q14721 858 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 TCP11X2Q5H9J9 407 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 ADSSL1Q8N142 457 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 LRRN4CLQ8ND94 238 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 LRRC15Q8TF66 581 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 CPLX3Q8WVH0 158 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 PLIN2Q99541 437 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 MTMR4Q9NYA4 1195 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 SUGT1Q9Y2Z0 365 aa20.32■□□□□ 0.84
VIM-209ENST00000544301 KLRC4O43908 158 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 MFAP3LO75121 409 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 PDHBP11177 359 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 COPB1P53618 953 aaKnown RBP20.31■□□□□ 0.84
VIM-209ENST00000544301 MTF1Q14872 753 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 KMT5BQ4FZB7 885 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 NEK8Q86SG6 692 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 CERS5Q8N5B7 392 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 AK8Q96MA6 479 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 DESI2Q9BSY9 194 aa20.31■□□□□ 0.84
VIM-209ENST00000544301 NAA15Q9BXJ9 866 aaKnown RBP20.31■□□□□ 0.84
VIM-209ENST00000544301 QTRT2Q9H974 415 aaKnown RBP20.31■□□□□ 0.84
VIM-209ENST00000544301 SOWAHDA6NJG2 315 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 KCNJ18B7U540 433 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 N4BP3O15049 544 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 GYPCP04921 128 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 KCNJ12Q14500 433 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 ZNF397Q8NF99 534 aaPredicted RBP20.3■□□□□ 0.84
VIM-209ENST00000544301 FRMPD2Q68DX3 1309 aaPredicted RBP20.3■□□□□ 0.84
VIM-209ENST00000544301 ESYT2A0FGR8 921 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 F8W031 263 aaPredicted RBP20.3■□□□□ 0.84
VIM-209ENST00000544301 CASP14P31944 242 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 HSPA1LP34931 641 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 CABP7Q86V35 215 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 PROM2Q8N271 834 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 VPS16Q9H269 839 aa20.3■□□□□ 0.84
VIM-209ENST00000544301 DDX4Q9NQI0 724 aaKnown RBP20.3■□□□□ 0.84
VIM-209ENST00000544301 ANKRD31Q8N7Z5 1873 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 IGKV6D-41A0A0C4DH26 115 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 H7C1D1 291 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 AKR1B1P15121 316 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 TXNRD1Q16881 649 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 RAD9BQ6WBX8 426 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 ANKRD20A12PQ8NF67 263 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 TBCKQ8TEA7 893 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 FEZ1Q99689 392 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 CUEDC2Q9H467 287 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 TAB2Q9NYJ8 693 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 BIN2Q9UBW5 565 aaPredicted RBP20.29■□□□□ 0.84
VIM-209ENST00000544301 PARP3Q9Y6F1 533 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 URI1O94763 535 aaPredicted RBP20.29■□□□□ 0.84
VIM-209ENST00000544301 RHOBTB3O94955 611 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 PLCG1P19174 1290 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 FXR1P51114 621 aaKnown RBP eCLIP20.29■□□□□ 0.84
VIM-209ENST00000544301 GNG11P61952 73 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 CBX1P83916 185 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 SEMA3FQ13275 785 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 DPP8Q6V1X1 898 aaPredicted RBP20.29■□□□□ 0.84
VIM-209ENST00000544301 CNGA4Q8IV77 575 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 REXO1Q8N1G1 1221 aaKnown RBP20.29■□□□□ 0.84
VIM-209ENST00000544301 LRRC47Q8N1G4 583 aaKnown RBP20.29■□□□□ 0.84
VIM-209ENST00000544301 WDR24Q96S15 920 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 ZC3H12CQ9C0D7 883 aaKnown RBP20.29■□□□□ 0.84
VIM-209ENST00000544301 MAGEF1Q9HAY2 307 aa20.29■□□□□ 0.84
VIM-209ENST00000544301 SPDYE4A6NLX3 237 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 hCG_1984214I3L0E3 225 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 ERCC6LQ2NKX8 1250 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 ASPRV1Q53RT3 343 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 JAKMIP3Q5VZ66 844 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 KRT27Q7Z3Y8 459 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 IRF2BP1Q8IU81 584 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 ZNF713Q8N859 430 aaPredicted RBP20.28■□□□□ 0.84
VIM-209ENST00000544301 GIMAP8Q8ND71 665 aaPredicted RBP20.28■□□□□ 0.84
VIM-209ENST00000544301 CCDC51Q96ER9 411 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 TMEM260Q9NX78 707 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 TTF2Q9UNY4 1162 aaKnown RBP20.28■□□□□ 0.84
VIM-209ENST00000544301 QSER1Q2KHR3 1735 aa20.28■□□□□ 0.84
VIM-209ENST00000544301 TRIM49BA6NDI0 452 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 CCDC175P0C221 793 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 SNHG28P0DPA3 235 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 SRGNP10124 158 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 FECHP22830 423 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 CASQ1P31415 396 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 ORC2Q13416 577 aaPredicted RBP20.27■□□□□ 0.84
VIM-209ENST00000544301 MXD3Q9BW11 206 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 SRRTQ9BXP5 876 aaKnown RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms