RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MX1P20591 662 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 LORP23490 312 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 CTSOP43234 321 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 ZAP70P43403 619 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 RBM5P52756 815 aaKnown RBP eCLIP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 ZNF280AP59817 542 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 HTRA3P83110 453 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 CENPCQ03188 943 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 USP50Q70EL3 339 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 CENPQQ7L2Z9 268 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 TAS1R3Q7RTX0 852 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 FMNL3Q8IVF7 1028 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 NPAS3Q8IXF0 933 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 PRIMPOLQ96LW4 560 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 ZSCAN10Q96SZ4 725 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 BOLA2Q9H3K6 86 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 MYOZ2Q9NPC6 264 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 PPP4R2Q9NY27 417 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 DDX56Q9NY93 547 aaKnown RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 LRP2BPQ9P2M1 347 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 PARP2Q9UGN5 583 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 DNMT3AQ9Y6K1 912 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 MAST3O60307 1309 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 SCN9AQ15858 1988 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 WDR90Q96KV7 1748 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 COL1A1P02452 1464 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 RHBDL3P58872 404 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 KCNMA1Q12791 1236 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 TTF1Q15361 905 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 DLGAP5Q15398 846 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 KIF4BQ2VIQ3 1234 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 TBC1D10BQ4KMP7 808 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 CAPN12Q6ZSI9 719 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 DZIP1Q86YF9 867 aaKnown RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 GPATCH11Q8N954 259 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 OTUD7AQ8TE49 926 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 GTF3C2Q8WUA4 911 aaPredicted RBP6.13□□□□□ -1.43
CLIP1-217ENST00000543205 ZFP42Q96MM3 310 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 ATP13A2Q9NQ11 1180 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 RAI14Q9P0K7 980 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 HRH3Q9Y5N1 445 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 TTC41PQ6P2S7 1318 aa6.13□□□□□ -1.43
CLIP1-217ENST00000543205 GOLIM4O00461 696 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 SH3BP5O60239 455 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 EIF3JO75822 258 aaKnown RBP6.12□□□□□ -1.43
CLIP1-217ENST00000543205 CYP2E1P05181 493 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-217ENST00000543205 PRDX5P30044 214 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 EPHA4P54764 986 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 GSTO1P78417 241 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 GRIK5Q16478 980 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 CFAP100Q494V2 611 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TBCELQ5QJ74 424 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TSHZ3Q63HK5 1081 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TSHZ1Q6ZSZ6 1077 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TMC7Q7Z402 723 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 MCF2L2Q86YR7 1114 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 SLC9A9Q8IVB4 645 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TRPM4Q8TD43 1214 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TEKT1Q969V4 418 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 NAP1L5Q96NT1 182 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-217ENST00000543205 HAUS7Q99871 368 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 TSPAN10Q9H1Z9 355 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-217ENST00000543205 PAG1Q9NWQ8 432 aa6.12□□□□□ -1.43
CLIP1-217ENST00000543205 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.12□□□□□ -1.43
CLIP1-217ENST00000543205 MYO1BO43795 1136 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 IDH1O75874 414 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 GLRX3O76003 335 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 S100BP04271 92 aaPredicted RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 LDHCP07864 332 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 GPC1P35052 558 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 CRKP46108 304 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 RNF144AP50876 292 aaPredicted RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 PDE1AP54750 535 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 FSTL1Q12841 308 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 MAP3K12Q12852 859 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 MTFR1Q15390 333 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 ZFYVE27Q5T4F4 411 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 TMEM214Q6NUQ4 689 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 LDHDQ86WU2 507 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 SCG3Q8WXD2 468 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 PKNOX2Q96KN3 472 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 MRIQ9BWK5 157 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 PIH1D3Q9NQM4 214 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 SCHIP1Q9P0W5 487 aaPredicted RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 TTLL8A6PVC2 850 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 WNT10BO00744 389 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 EGFRP00533 1210 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 ZNF76P36508 570 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 HIRAP54198 1017 aaPredicted RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 AMPD3Q01432 767 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 MECOMQ03112 1051 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 LONRF3Q496Y0 759 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 ZNF394Q53GI3 561 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 NAA16Q6N069 864 aaPredicted RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 HHIPL2Q6UWX4 724 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 RNF217Q8TC41 542 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 IRF7Q92985 503 aa6.11□□□□□ -1.43
CLIP1-217ENST00000543205 DCPSQ96C86 337 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 DUSP9Q99956 384 aaKnown RBP6.11□□□□□ -1.43
CLIP1-217ENST00000543205 NOL10Q9BSC4 688 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms