RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 C12orf42Q96LP6 360 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 KCNH6Q9H252 994 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 MROH8Q9H579 483 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 C1orf115Q9H7X2 142 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 UBE2ZQ9H832 354 aaPredicted RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 SPC25Q9HBM1 224 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 GOPCQ9HD26 462 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 CABP5Q9NP86 173 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 GINM1Q9NU53 330 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 FAM86C1Q9NVL1 165 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 MTUS1Q9ULD2 1270 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 PA2G4Q9UQ80 394 aaKnown RBP5.86□□□□□ -1.47
LIMS1-214ENST00000542845 MYH1P12882 1939 aa5.86□□□□□ -1.47
LIMS1-214ENST00000542845 ZNF536O15090 1300 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 ELP1O95163 1332 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 FLT1P17948 1338 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 KIF28PB7ZC32 967 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 DCXO43602 365 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 GFRA3O60609 400 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 FLOT1O75955 427 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 MAP4K4O95819 1239 aaPredicted RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 POU3F3P20264 500 aaPredicted RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 DYNLL1P63167 89 aaKnown RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 BEX3Q00994 111 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 DDX10Q13206 875 aaKnown RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 TTLL4Q14679 1199 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 KCTD2Q14681 263 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 PTCRAQ6ISU1 281 aaPredicted RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 ATF7IPQ6VMQ6 1270 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 NOL8Q76FK4 1167 aaKnown RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 SPRED2Q7Z698 418 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 FAM126BQ8IXS8 530 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 ZNF710Q8N1W2 664 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 CCDC82Q8N4S0 544 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 SPATA5Q8NB90 893 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 PCSK9Q8NBP7 692 aaKnown RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 SHCBP1Q8NEM2 672 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 KLHDC9Q8NEP7 349 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.85□□□□□ -1.47
LIMS1-214ENST00000542845 GDPD5Q8WTR4 605 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 ATG4CQ96DT6 458 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 XAGE2Q96GT9 111 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 MFSD14AQ96MC6 490 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 EPAS1Q99814 870 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 KIAA1683Q9H0B3 1180 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 TRPV6Q9H1D0 765 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 SNRKQ9NRH2 765 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 HMG20BQ9P0W2 317 aa5.85□□□□□ -1.47
LIMS1-214ENST00000542845 SCN5AQ14524 2016 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 COL11A1P12107 1806 aaPredicted RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 ZNF236Q9UL36 1845 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 A0A1B0GUL7 405 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 H3BQ06 376 aaPredicted RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 ARHGEF15O94989 841 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 CD4P01730 458 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 IL15P40933 162 aaPredicted RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 USP5P45974 858 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 TAP1Q03518 808 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 TFCP2Q12800 502 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 MCM6Q14566 821 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 MVPQ14764 893 aaKnown RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 SEPT2Q15019 361 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 VARS2Q5ST30 1063 aaKnown RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 CCSAPQ6IQ19 270 aaPredicted RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 NAA16Q6N069 864 aaPredicted RBP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 CXCL17Q6UXB2 119 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 ABRAQ8N0Z2 381 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 SPICE1Q8N0Z3 855 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 PRSS33Q8NF86 280 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 DDX11Q96FC9 970 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 ZBED2Q9BTP6 218 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 FTOQ9C0B1 505 aaKnown RBP eCLIP5.84□□□□□ -1.47
LIMS1-214ENST00000542845 USP44Q9H0E7 712 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 NRBP1Q9UHY1 535 aa5.84□□□□□ -1.47
LIMS1-214ENST00000542845 CHD9Q3L8U1 2897 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 COL4A4P53420 1690 aaPredicted RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 DUSP11O75319 330 aaKnown RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 CIAO1O76071 339 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 SLC25A27O95847 323 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 SNAI1O95863 264 aaPredicted RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 ACTN1P12814 892 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 PDIA4P13667 645 aaKnown RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 PTPN5P54829 565 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 PSMC6P62333 389 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 ITGA7Q13683 1181 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 TMEM132BQ14DG7 1078 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 TSR1Q2NL82 804 aaKnown RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 ZNF792Q3KQV3 632 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 CCDC144BQ3MJ40 725 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 LEXMQ3ZCV2 418 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 TMCO2Q7Z6W1 182 aaPredicted RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 MB21D1Q8N884 522 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 ATOH1Q92858 354 aaPredicted RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 CCDC97Q96F63 343 aaPredicted RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 CRBNQ96SW2 442 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 NOC4LQ9BVI4 516 aaKnown RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 REPIN1Q9BWE0 567 aaKnown RBP5.83□□□□□ -1.48
LIMS1-214ENST00000542845 WNT8AQ9H1J5 351 aa5.83□□□□□ -1.48
LIMS1-214ENST00000542845 POLR3EQ9NVU0 708 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms