RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GTF3C6Q969F1 213 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 MTMR8Q96EF0 704 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 TSKSQ9UJT2 592 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 CNMDO75829 334 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 SNAP25P60880 206 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 ERVK-9P63128 1117 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 ERVK-24P63145 666 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 FUT2Q10981 343 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 NTRK3Q16288 839 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 NECAB1Q8N987 351 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 RRP36Q96EU6 259 aaKnown RBP19.86■□□□□ 0.77
LIG1-204ENST00000542460 ZNF214Q9UL59 606 aaPredicted RBP19.86■□□□□ 0.77
LIG1-204ENST00000542460 RLFQ13129 1914 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 ZBTB5O15062 677 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 PEX10O60683 326 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 IFNAR1P17181 557 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 STAT3P40763 770 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 PLS1Q14651 629 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 CDC37Q16543 378 aaPredicted RBP19.85■□□□□ 0.77
LIG1-204ENST00000542460 CCDC174Q6PII3 467 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 CPXCR1Q8N123 301 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 SNX21Q969T3 373 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 PIGSQ96S52 555 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 TEX13BQ9BXU2 312 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 SPATC1LQ9H0A9 340 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 RAVER2Q9HCJ3 691 aaKnown RBP19.85■□□□□ 0.77
LIG1-204ENST00000542460 PNMA2Q9UL42 364 aa19.85■□□□□ 0.77
LIG1-204ENST00000542460 PNMA6FA0A0J9YX94 578 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 CDKL5O76039 1030 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 ICAM1P05362 532 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 CCNA1P78396 465 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 QRICH1Q2TAL8 776 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 Q3C1V9 767 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 HOMER1Q86YM7 354 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 TMX3Q96JJ7 454 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 SEC63Q9UGP8 760 aaKnown RBP19.84■□□□□ 0.77
LIG1-204ENST00000542460 ZNF536O15090 1300 aa19.84■□□□□ 0.77
LIG1-204ENST00000542460 NOM1Q5C9Z4 860 aaKnown RBP19.83■□□□□ 0.77
LIG1-204ENST00000542460 V9GY48 417 aaPredicted RBP19.83■□□□□ 0.77
LIG1-204ENST00000542460 CNTNAP5Q8WYK1 1306 aa19.83■□□□□ 0.77
LIG1-204ENST00000542460 GPR25O00155 361 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 SP3Q02447 781 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 TRAF1Q13077 416 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 SNRNP48Q6IEG0 339 aaKnown RBP19.82■□□□□ 0.76
LIG1-204ENST00000542460 RIOX2Q8IUF8 465 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 PIBF1Q8WXW3 757 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 PHKBQ93100 1093 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 AGBL1Q96MI9 1066 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 MOV10L1Q9BXT6 1211 aaKnown RBP19.82■□□□□ 0.76
LIG1-204ENST00000542460 RNF26Q9BY78 433 aaPredicted RBP19.82■□□□□ 0.76
LIG1-204ENST00000542460 RBM27Q9P2N5 1060 aaKnown RBP19.82■□□□□ 0.76
LIG1-204ENST00000542460 PARP14Q460N5 1801 aa19.82■□□□□ 0.76
LIG1-204ENST00000542460 PRPF3O43395 683 aaKnown RBP19.81■□□□□ 0.76
LIG1-204ENST00000542460 SLC25A27O95847 323 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 COPB2P35606 906 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 AKAP17AQ02040 695 aaKnown RBP19.81■□□□□ 0.76
LIG1-204ENST00000542460 FBXO11Q86XK2 927 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 CCDC83Q8IWF9 413 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 TRIM22Q8IYM9 498 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 AMNQ9BXJ7 453 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 CCPG1Q9ULG6 757 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 SSRP1Q08945 709 aaKnown RBP19.81■□□□□ 0.76
LIG1-204ENST00000542460 ST3GAL1Q11201 340 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 CCAR1Q8IX12 1150 aaKnown RBP19.81■□□□□ 0.76
LIG1-204ENST00000542460 SHCBP1Q8NEM2 672 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 LLPHQ9BRT6 129 aaKnown RBP19.81■□□□□ 0.76
LIG1-204ENST00000542460 SLC26A6Q9BXS9 759 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 A0A0G2JMZ2 1700 aa19.81■□□□□ 0.76
LIG1-204ENST00000542460 hCG_1642624A0A1W2PR95 340 aa19.8■□□□□ 0.76
LIG1-204ENST00000542460 K7ELQ4 463 aaPredicted RBP19.8■□□□□ 0.76
LIG1-204ENST00000542460 FMNL1O95466 1100 aaPredicted RBP19.8■□□□□ 0.76
LIG1-204ENST00000542460 CTDNEP1O95476 244 aa19.8■□□□□ 0.76
LIG1-204ENST00000542460 SLC4A3P48751 1232 aa19.8■□□□□ 0.76
LIG1-204ENST00000542460 TKFCQ3LXA3 575 aa19.8■□□□□ 0.76
LIG1-204ENST00000542460 MROH8Q9H579 483 aa19.8■□□□□ 0.76
LIG1-204ENST00000542460 RIPK3Q9Y572 518 aa19.8■□□□□ 0.76
LIG1-204ENST00000542460 PPP1R11O60927 126 aaPredicted RBP19.79■□□□□ 0.76
LIG1-204ENST00000542460 FKTNO75072 461 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 PPFIA3O75145 1194 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 ALAS1P13196 640 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 ERCC3P19447 782 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 MAPK4P31152 587 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 USH1GQ495M9 461 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 NCAPG2Q86XI2 1143 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 HSCBQ8IWL3 235 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 NSUN7Q8NE18 718 aaKnown RBP19.79■□□□□ 0.76
LIG1-204ENST00000542460 PORCNQ9H237 461 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 PCDHA1Q9Y5I3 950 aa19.79■□□□□ 0.76
LIG1-204ENST00000542460 DEXIO95424 95 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 LACTBP83111 547 aaPredicted RBP19.78■□□□□ 0.76
LIG1-204ENST00000542460 KIF22Q14807 665 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 PFKFB3Q16875 520 aaPredicted RBP19.78■□□□□ 0.76
LIG1-204ENST00000542460 CHST13Q8NET6 341 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 ZNF296Q8WUU4 475 aaPredicted RBP19.78■□□□□ 0.76
LIG1-204ENST00000542460 TRERF1Q96PN7 1200 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 EFCC1Q9HA90 598 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 FBXO40Q9UH90 709 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 ABCB11O95342 1321 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 STK36Q9NRP7 1315 aa19.78■□□□□ 0.76
LIG1-204ENST00000542460 hCG_1984214I3L0E3 225 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms