RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 CXCL17Q6UXB2 119 aa11.55□□□□□ -0.56
YBX3-211ENST00000541351 MRPL38Q96DV4 380 aaKnown RBP11.55□□□□□ -0.56
YBX3-211ENST00000541351 XAGE2Q96GT9 111 aa11.55□□□□□ -0.56
YBX3-211ENST00000541351 RAD9AQ99638 391 aa11.55□□□□□ -0.56
YBX3-211ENST00000541351 TRPV6Q9H1D0 765 aa11.55□□□□□ -0.56
YBX3-211ENST00000541351 SUGCTQ9HAC7 445 aa11.55□□□□□ -0.56
YBX3-211ENST00000541351 FAM86C1Q9NVL1 165 aa11.55□□□□□ -0.56
YBX3-211ENST00000541351 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.55□□□□□ -0.56
YBX3-211ENST00000541351 SIPA1L1O43166 1804 aa11.54□□□□□ -0.56
YBX3-211ENST00000541351 PARNO95453 639 aaKnown RBP11.54□□□□□ -0.56
YBX3-211ENST00000541351 TIMM10P62072 90 aa11.54□□□□□ -0.56
YBX3-211ENST00000541351 EXOSC9Q06265 439 aaKnown RBP11.54□□□□□ -0.56
YBX3-211ENST00000541351 BFSP2Q13515 415 aa11.54□□□□□ -0.56
YBX3-211ENST00000541351 LRRFIP1Q32MZ4 808 aaKnown RBP11.54□□□□□ -0.56
YBX3-211ENST00000541351 RNF135Q8IUD6 432 aa11.54□□□□□ -0.56
YBX3-211ENST00000541351 FBXO22Q8NEZ5 403 aa11.54□□□□□ -0.56
YBX3-211ENST00000541351 SAMD11Q96NU1 681 aa11.54□□□□□ -0.56
YBX3-211ENST00000541351 ALDH8A1Q9H2A2 487 aaPredicted RBP11.54□□□□□ -0.56
YBX3-211ENST00000541351 FAM186AA6NE01 2351 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 ZNFX1Q9P2E3 1918 aaKnown RBP11.53□□□□□ -0.56
YBX3-211ENST00000541351 TNFAIP2Q03169 654 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 SMAD2Q15796 467 aaKnown RBP11.53□□□□□ -0.56
YBX3-211ENST00000541351 TBC1D9Q6ZT07 1266 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 TMEM179Q6ZVK1 233 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 CCDC155Q8N6L0 562 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 NEUROD6Q96NK8 337 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 FSD1Q9BTV5 496 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 TEX13BQ9BXU2 312 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 USP44Q9H0E7 712 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 MTUS1Q9ULD2 1270 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 CTDP1Q9Y5B0 961 aaPredicted RBP11.53□□□□□ -0.56
YBX3-211ENST00000541351 RIF1Q5UIP0 2472 aaKnown RBP11.53□□□□□ -0.56
YBX3-211ENST00000541351 PTPRCP08575 1304 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 C5orf42Q9H799 3197 aa11.53□□□□□ -0.56
YBX3-211ENST00000541351 COL4A4P53420 1690 aaPredicted RBP11.52□□□□□ -0.56
YBX3-211ENST00000541351 PRR23AA6NEV1 266 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 ARID4AP29374 1257 aaPredicted RBP11.52□□□□□ -0.57
YBX3-211ENST00000541351 MCAMP43121 646 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 BEX3Q00994 111 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 SEPT2Q15019 361 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 TMED8Q6PL24 325 aaPredicted RBP11.52□□□□□ -0.57
YBX3-211ENST00000541351 DGLUCYQ7Z3D6 616 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 TLK2Q86UE8 772 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 BANK1Q8NDB2 785 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 ANKS1AQ92625 1134 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 NKD2Q969F2 451 aaPredicted RBP11.52□□□□□ -0.57
YBX3-211ENST00000541351 VCPKMTQ9H867 229 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 POLR3EQ9NVU0 708 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 FBXO40Q9UH90 709 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 ADAMTS5Q9UNA0 930 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 Q9Y3F1 56 aa11.52□□□□□ -0.57
YBX3-211ENST00000541351 VWA5AO00534 786 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 KDM4AO75164 1064 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 KRT37O76014 449 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 ARHGEF15O94989 841 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 GJB5O95377 273 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 UBTFL1P0CB47 393 aaPredicted RBP11.51□□□□□ -0.57
YBX3-211ENST00000541351 AVPR2P30518 371 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 NBL1P41271 181 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 SIGLEC14Q08ET2 396 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 BRDTQ58F21 947 aaPredicted RBP11.51□□□□□ -0.57
YBX3-211ENST00000541351 ARMCX2Q7L311 632 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 WDR63Q8IWG1 891 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 ANKRD35Q8N283 1001 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 NSUN3Q9H649 340 aaKnown RBP11.51□□□□□ -0.57
YBX3-211ENST00000541351 COPRSQ9NQ92 184 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
YBX3-211ENST00000541351 CLDND1Q9NY35 253 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 NOD1Q9Y239 953 aa11.51□□□□□ -0.57
YBX3-211ENST00000541351 TECTAO75443 2155 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 DNAJC25-GNG10A0A024R161 153 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 LINC01553A4QN01 128 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 STXBP3O00186 592 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 POLR3DP05423 398 aaPredicted RBP11.5□□□□□ -0.57
YBX3-211ENST00000541351 IQCF3P0C7M6 154 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 SHMT1P34896 483 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 ZXDAP98168 799 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 ASCL5Q7RTU5 278 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 SPICE1Q8N0Z3 855 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 GOPCQ9HD26 462 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 ZNF214Q9UL59 606 aaPredicted RBP11.5□□□□□ -0.57
YBX3-211ENST00000541351 PPP1R9AQ9ULJ8 1098 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 TMX2Q9Y320 296 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 INSL6Q9Y581 213 aa11.5□□□□□ -0.57
YBX3-211ENST00000541351 ABHD14A-ACY1A0A1B0GW23 586 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 A0A1W2PRG0 241 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 ASB14A6NK59 587 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 H0Y858 1186 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 CYP2C9P11712 490 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 WDR5P61964 334 aaKnown RBP11.49□□□□□ -0.57
YBX3-211ENST00000541351 ICA1Q05084 483 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 SMAD4Q13485 552 aaKnown RBP11.49□□□□□ -0.57
YBX3-211ENST00000541351 SNRNP48Q6IEG0 339 aaKnown RBP11.49□□□□□ -0.57
YBX3-211ENST00000541351 VWCEQ96DN2 955 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 TLR9Q9NR96 1032 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 SWAP70Q9UH65 585 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 EPG5Q9HCE0 2579 aa11.49□□□□□ -0.57
YBX3-211ENST00000541351 LCHNA4D1U4 455 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 SOWAHBA6NEL2 793 aa11.48□□□□□ -0.57
YBX3-211ENST00000541351 CTAGE5O15320 804 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms