RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZNF543Q08ER8 600 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 NONOQ15233 471 aaKnown RBP eCLIP15.61■□□□□ 0.09
RTN3-210ENST00000540798 CFAP100Q494V2 611 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 NAALADL2Q58DX5 795 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 CDKAL1Q5VV42 579 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 SPATA1Q5VX52 437 aa15.61■□□□□ 0.09
RTN3-210ENST00000540798 TRMT44Q8IYL2 757 aaKnown RBP15.61■□□□□ 0.09
RTN3-210ENST00000540798 DNAJC18Q9H819 358 aa15.6■□□□□ 0.09
RTN3-210ENST00000540798 HLA-DOAP06340 250 aa15.6■□□□□ 0.09
RTN3-210ENST00000540798 TXLNAP40222 546 aa15.6■□□□□ 0.09
RTN3-210ENST00000540798 PPP1R18Q6NYC8 613 aa15.6■□□□□ 0.09
RTN3-210ENST00000540798 LRRC47Q8N1G4 583 aaKnown RBP15.6■□□□□ 0.09
RTN3-210ENST00000540798 UBA5Q9GZZ9 404 aa15.6■□□□□ 0.09
RTN3-210ENST00000540798 SAMSN1Q9NSI8 373 aaKnown RBP15.6■□□□□ 0.09
RTN3-210ENST00000540798 FRMPD2Q68DX3 1309 aaPredicted RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 SYNRGQ9UMZ2 1314 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 ECE2O60344 883 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 HOMER1Q86YM7 354 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 MTMR8Q96EF0 704 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 CCDC17Q96LX7 622 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 AK8Q96MA6 479 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 C16orf45Q96MC5 204 aaPredicted RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 COL2A1P02458 1487 aaPredicted RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 A0A1B0GTH6 734 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 G3V3G9 751 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 SEMA3FQ13275 785 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 NR1I3Q14994 352 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 TPD52L1Q16890 204 aaPredicted RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 PPP4R3BQ5MIZ7 849 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 DCAF8Q5TAQ9 597 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 E4F1Q66K89 784 aaPredicted RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 ZFPM1Q8IX07 1006 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 DHX36Q9H2U1 1008 aaKnown RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 PSDA5PKW4 1024 aaPredicted RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 MYL1P05976 194 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 KARSQ15046 597 aaKnown RBP15.59■□□□□ 0.09
RTN3-210ENST00000540798 SOGA3Q5TF21 947 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 NEK8Q86SG6 692 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 CLEC10AQ8IUN9 316 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 FAM198AQ9UFP1 575 aa15.59■□□□□ 0.09
RTN3-210ENST00000540798 TNNT1P13805 278 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 CCDC112Q8NEF3 446 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 CNKSR1Q969H4 720 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 SERPINA10Q9UK55 444 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 EDIL3O43854 480 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 OR52Z1P0C646 297 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 SLC15A2Q16348 729 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 ZNF658Q5TYW1 1059 aaPredicted RBP15.58■□□□□ 0.08
RTN3-210ENST00000540798 REXO1Q8N1G1 1221 aaKnown RBP15.58■□□□□ 0.08
RTN3-210ENST00000540798 MKL1Q969V6 931 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 BLZF1Q9H2G9 400 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 JMJD4Q9H9V9 463 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 KBTBD4Q9NVX7 518 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 RMND1Q9NWS8 449 aa15.58■□□□□ 0.08
RTN3-210ENST00000540798 CDC25AP30304 524 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 STAT6P42226 847 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 SH3BP5LQ7L8J4 393 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 TMEM139Q8IV31 216 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 LRRC15Q8TF66 581 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 STAMQ92783 540 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 VAT1LQ9HCJ6 419 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 PCDHAC2Q9Y5I4 1007 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 PNMA6FA0A0J9YX94 578 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 PP2D1A8MPX8 630 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 RPN1P04843 607 aaKnown RBP15.57■□□□□ 0.08
RTN3-210ENST00000540798 GPATCH4Q5T3I0 446 aaKnown RBP15.57■□□□□ 0.08
RTN3-210ENST00000540798 TATDN1Q6P1N9 297 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 ADGRF4Q8IZF3 695 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 TBCKQ8TEA7 893 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 CUEDC2Q9H467 287 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 MAGEF1Q9HAY2 307 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 RWDD2AQ9UIY3 292 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 RIOK3O14730 519 aaKnown RBP15.57■□□□□ 0.08
RTN3-210ENST00000540798 PPP1R11O60927 126 aaPredicted RBP15.57■□□□□ 0.08
RTN3-210ENST00000540798 PBX1P40424 430 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 CLK2P49760 499 aaKnown RBP15.57■□□□□ 0.08
RTN3-210ENST00000540798 KCNB1Q14721 858 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 SMYD4Q8IYR2 804 aaPredicted RBP15.57■□□□□ 0.08
RTN3-210ENST00000540798 CAMKK2Q96RR4 588 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 PAXBP1Q9Y5B6 917 aa15.57■□□□□ 0.08
RTN3-210ENST00000540798 ATRNL1Q5VV63 1379 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 CCNT1O60563 726 aaKnown RBP15.56■□□□□ 0.08
RTN3-210ENST00000540798 CHRNA5P30532 468 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 EIF6P56537 245 aaKnown RBP15.56■□□□□ 0.08
RTN3-210ENST00000540798 SPECC1LQ69YQ0 1117 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 KIAA0825Q8IV33 1275 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 MTMR9Q96QG7 549 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 DDTLA6NHG4 134 aaPredicted RBP15.56■□□□□ 0.08
RTN3-210ENST00000540798 CTIFO43310 598 aaKnown RBP15.56■□□□□ 0.08
RTN3-210ENST00000540798 KLRC4O43908 158 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 ADCY7P51828 1080 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 LETM2Q2VYF4 491 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 RRAGBQ5VZM2 374 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 CC2D2BQ6DHV5 1058 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 IGSF22Q8N9C0 903 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 RIC8AQ9NPQ8 531 aa15.56■□□□□ 0.08
RTN3-210ENST00000540798 CDK11BP21127 795 aaKnown RBP15.55■□□□□ 0.08
RTN3-210ENST00000540798 COA7Q96BR5 231 aa15.55■□□□□ 0.08
RTN3-210ENST00000540798 TMEM260Q9NX78 707 aa15.55■□□□□ 0.08
RTN3-210ENST00000540798 NYAP2Q9P242 653 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms