RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 YBX1P67809 324 aaKnown RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 SRSF3P84103 164 aaKnown RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 PAK2Q13177 524 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 SSPNQ14714 243 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 ANKRD39Q53RE8 183 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 METTL16Q86W50 562 aaKnown RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 SMARCC1Q92922 1105 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 BRF1Q92994 677 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 GINM1Q9NU53 330 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 CNOT6Q9ULM6 557 aaKnown RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 A0A1W2PQ45 241 aaPredicted RBP6.15□□□□□ -1.42
VPS13A-213ENST00000539950 A0A1W2PQY0 241 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 GSTM1P09488 218 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 NOL9Q5SY16 702 aaKnown RBP6.15□□□□□ -1.42
VPS13A-213ENST00000539950 TTLL10Q6ZVT0 673 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 ZNF654Q8IZM8 581 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 JMJD8Q96S16 334 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 CNTD2Q9H8S5 307 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 GP6Q9HCN6 339 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 SIRT5Q9NXA8 310 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 ZNF214Q9UL59 606 aaPredicted RBP6.15□□□□□ -1.42
VPS13A-213ENST00000539950 ZNF451Q9Y4E5 1061 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 KCTD3Q9Y597 815 aa6.15□□□□□ -1.42
VPS13A-213ENST00000539950 LTBP3Q9NS15 1303 aa6.15□□□□□ -1.43
VPS13A-213ENST00000539950 CD247P20963 164 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 VAMP1P23763 118 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 CYP4F8P98187 520 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 CWF19L1Q69YN2 538 aaKnown RBP6.14□□□□□ -1.43
VPS13A-213ENST00000539950 FIBCD1Q8N539 461 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 NUP43Q8NFH3 380 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 KLHL14Q9P2G3 628 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 IMPACTQ9P2X3 320 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 ACSL6Q9UKU0 697 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 EFR3BQ9Y2G0 817 aa6.14□□□□□ -1.43
VPS13A-213ENST00000539950 NUDT19A8MXV4 375 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 CBFA2T2O43439 604 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 MPOP05164 745 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 INHBBP09529 407 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 PI3P19957 117 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 ARL4AP40617 200 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 LAPTM5Q13571 262 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 NAT16Q8N8M0 369 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 PANK1Q8TE04 598 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 TNFRSF12AQ9NP84 129 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 FHOD1Q9Y613 1164 aa6.13□□□□□ -1.43
VPS13A-213ENST00000539950 N4BP3O15049 544 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 MSL3P1P0C860 447 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 SOX9P48436 509 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 CDR1P51861 262 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 COL9A2Q14055 689 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-213ENST00000539950 ZNF385BQ569K4 471 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 LILRA6Q6PI73 481 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 SIGLEC10Q96LC7 697 aa6.12□□□□□ -1.43
VPS13A-213ENST00000539950 FCRL3Q96P31 734 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-213ENST00000539950 SRRTQ9BXP5 876 aaKnown RBP6.12□□□□□ -1.43
VPS13A-213ENST00000539950 NOL6Q9H6R4 1146 aaKnown RBP6.12□□□□□ -1.43
VPS13A-213ENST00000539950 EPB41L4AQ9HCS5 686 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-213ENST00000539950 ADAMTS20P59510 1910 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 RFXAPO00287 272 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 ABLIM1O14639 778 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 FGF10O15520 208 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-213ENST00000539950 ITGA4P13612 1032 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 IFNGR1P15260 489 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 HDLBPQ00341 1268 aaKnown RBP6.11□□□□□ -1.43
VPS13A-213ENST00000539950 MVKQ03426 396 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 RAB3GAP1Q15042 981 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 C9orf131Q5VYM1 1079 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 RPTNQ6XPR3 784 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 TMC6Q7Z403 805 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 ZDHHC15Q96MV8 337 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 CRBNQ96SW2 442 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 PCDHB10Q9UN67 800 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 SF3B6Q9Y3B4 125 aaKnown RBP6.11□□□□□ -1.43
VPS13A-213ENST00000539950 IRAK3Q9Y616 596 aa6.11□□□□□ -1.43
VPS13A-213ENST00000539950 IRS4O14654 1257 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-213ENST00000539950 CD3EP07766 207 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 GIPRP48546 466 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 EIF6P56537 245 aaKnown RBP6.1□□□□□ -1.43
VPS13A-213ENST00000539950 TCERG1LQ5VWI1 586 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 HLA-DQA1Q5Y7H0 255 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 OLFML2BQ68BL8 750 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 NT5DC4Q86YG4 428 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 RASGRP4Q8TDF6 673 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 MZB1Q8WU39 189 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 GPRASP2Q96D09 838 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 HAUS7Q99871 368 aa6.1□□□□□ -1.43
VPS13A-213ENST00000539950 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-213ENST00000539950 A0A1W2PQH9 124 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 BMP7P18075 431 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 NOP2P46087 812 aaKnown RBP6.09□□□□□ -1.43
VPS13A-213ENST00000539950 PPP2R5DQ14738 602 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 CBX2Q14781 532 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-213ENST00000539950 GNPTABQ3T906 1256 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 LDHDQ86WU2 507 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 JAMLQ86YT9 394 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 IGDCC3Q8IVU1 814 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 TMEFF1Q8IYR6 380 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 ADCY4Q8NFM4 1077 aa6.09□□□□□ -1.43
VPS13A-213ENST00000539950 DACT3Q96B18 629 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-213ENST00000539950 MRRFQ96E11 262 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms