RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 SLC4A3P48751 1232 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 LRRC26Q2I0M4 334 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 SLC35G1Q2M3R5 365 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 LHX8Q68G74 356 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 CYB5R4Q7L1T6 521 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 NCAPG2Q86XI2 1143 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 CPXCR1Q8N123 301 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 GMCL1P1Q8NEA9 526 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 FGD4Q96M96 766 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 AGBL1Q96MI9 1066 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 NECAB3Q96P71 396 aaPredicted RBP8.55□□□□□ -1.04
LMO3-220ENST00000539232 PURBQ96QR8 312 aaKnown RBP8.55□□□□□ -1.04
LMO3-220ENST00000539232 NUDT12Q9BQG2 462 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 DSCC1Q9BVC3 393 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 SH2D4AQ9H788 454 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 HMX1Q9NP08 348 aaPredicted RBP8.55□□□□□ -1.04
LMO3-220ENST00000539232 GPCPD1Q9NPB8 672 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 STX8Q9UNK0 236 aa8.55□□□□□ -1.04
LMO3-220ENST00000539232 ZMYM6O95789 1325 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 LTBP2Q14767 1821 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 NAV1Q8NEY1 1877 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 SLC3A2P08195 630 aaKnown RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 HOXC6P09630 235 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 GOLGA8HP0CJ92 632 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 BMP3P12645 472 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 XRCC5P13010 732 aaKnown RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 ZKSCAN1P17029 563 aaPredicted RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 STAT3P40763 770 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 IRX5P78411 483 aaPredicted RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 C9orf50Q5SZB4 431 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 ANO1Q5XXA6 986 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 MFSD6Q6ZSS7 791 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 TICAM2Q86XR7 235 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 RIOX2Q8IUF8 465 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 CCAR1Q8IX12 1150 aaKnown RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 GTF3C2Q8WUA4 911 aaPredicted RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 PPM1EQ8WY54 764 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 GAS2L1Q99501 681 aaPredicted RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 APBA2Q99767 749 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 SLC38A10Q9HBR0 1119 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 ZSWIM5Q9P217 1185 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 PRKAG2Q9UGJ0 569 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 ISY1Q9ULR0 285 aaKnown RBP8.54□□□□□ -1.04
LMO3-220ENST00000539232 DNAH12Q6ZR08 3092 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 CACNA1GO43497 2377 aa8.54□□□□□ -1.04
LMO3-220ENST00000539232 RBAK-RBAKDNI3L0D1 243 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 ZNF213O14771 459 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 CYP21A2P08686 494 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 BMP1P13497 986 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 RGS2P41220 211 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 SLC1A4P43007 532 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 ANTXR2P58335 489 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 CCNA1P78396 465 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 CNTN2Q02246 1040 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 NHLH1Q02575 133 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 MUM1L1Q5H9M0 696 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 SNRNP48Q6IEG0 339 aaKnown RBP8.53□□□□□ -1.04
LMO3-220ENST00000539232 CCDC174Q6PII3 467 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 CENPQQ7L2Z9 268 aaPredicted RBP8.53□□□□□ -1.04
LMO3-220ENST00000539232 CHST3Q7LGC8 479 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 MB21D1Q8N884 522 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 ENAHQ8N8S7 591 aaPredicted RBP8.53□□□□□ -1.04
LMO3-220ENST00000539232 PRPF38AQ8NAV1 312 aaKnown RBP8.53□□□□□ -1.04
LMO3-220ENST00000539232 SHCBP1Q8NEM2 672 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 SOCS4Q8WXH5 440 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 LENG1Q96BZ8 264 aaPredicted RBP8.53□□□□□ -1.04
LMO3-220ENST00000539232 GMCL1Q96IK5 515 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 LSG1Q9H089 658 aaKnown RBP8.53□□□□□ -1.04
LMO3-220ENST00000539232 ZNF287Q9HBT7 754 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 C11orf16Q9NQ32 467 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 HOMER2Q9NSB8 354 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 TCP11L1Q9NUJ3 509 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 FEM1BQ9UK73 627 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 PRR12Q9ULL5 1215 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 ASTN1O14525 1302 aa8.53□□□□□ -1.04
LMO3-220ENST00000539232 PTPRFP10586 1907 aa8.52□□□□□ -1.04
LMO3-220ENST00000539232 MYH1P12882 1939 aa8.52□□□□□ -1.04
LMO3-220ENST00000539232 HIP1O00291 1037 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 PDHBP11177 359 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 TOP1P11387 765 aaKnown RBP8.52□□□□□ -1.05
LMO3-220ENST00000539232 CYBAP13498 195 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 AAK1Q2M2I8 961 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 CCDC96Q2M329 555 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 ZNF792Q3KQV3 632 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 TMEM63BQ5T3F8 832 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 DPP9Q86TI2 863 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 MAML3Q96JK9 1138 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 MMP19Q99542 508 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 UBA5Q9GZZ9 404 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 TSPYL2Q9H2G4 693 aaPredicted RBP8.52□□□□□ -1.05
LMO3-220ENST00000539232 MROH8Q9H579 483 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 CWC22Q9HCG8 908 aaKnown RBP8.52□□□□□ -1.05
LMO3-220ENST00000539232 CXXC1Q9P0U4 656 aaPredicted RBP8.52□□□□□ -1.05
LMO3-220ENST00000539232 BAZ2AQ9UIF9 1905 aaKnown RBP8.52□□□□□ -1.05
LMO3-220ENST00000539232 CACNA1BQ00975 2339 aa8.52□□□□□ -1.05
LMO3-220ENST00000539232 DNAJC25-GNG10A0A024R161 153 aa8.51□□□□□ -1.05
LMO3-220ENST00000539232 ATP2A1O14983 1001 aa8.51□□□□□ -1.05
LMO3-220ENST00000539232 ADCY6O43306 1168 aa8.51□□□□□ -1.05
LMO3-220ENST00000539232 ZBED4O75132 1171 aa8.51□□□□□ -1.05
LMO3-220ENST00000539232 SNAI1O95863 264 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms