RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 PLA2G6O60733 806 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 DUSP11O75319 330 aaKnown RBP16.46■□□□□ 0.23
SYNE1-235ENST00000537033 TLE2Q04725 743 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 ACVR2BQ13705 512 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 ALX1Q15699 326 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 CCDC96Q2M329 555 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 TKFCQ3LXA3 575 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 RCSD1Q6JBY9 416 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 KCTD1Q719H9 257 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 LNPKQ9C0E8 428 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 RWDD1Q9H446 243 aaPredicted RBP16.46■□□□□ 0.23
SYNE1-235ENST00000537033 IL17RBQ9NRM6 502 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 RNF146Q9NTX7 359 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 MTMR7Q9Y216 660 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 TACC3Q9Y6A5 838 aa16.46■□□□□ 0.23
SYNE1-235ENST00000537033 A0A0D9SFI3 127 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 MOXD2PA6NHM9 499 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 NMT2O60551 498 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 PQBP1O60828 265 aaKnown RBP16.45■□□□□ 0.22
SYNE1-235ENST00000537033 ADAMTS4O75173 837 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 CLTBP09497 229 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 RRP12Q5JTH9 1297 aaKnown RBP16.45■□□□□ 0.22
SYNE1-235ENST00000537033 Q7L0L9 218 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 ARMCX2Q7L311 632 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 BADQ92934 168 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 FAM227BQ96M60 508 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 INCENPQ9NQS7 918 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 STARD7Q9NQZ5 370 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 ZMYM6O95789 1325 aa16.45■□□□□ 0.22
SYNE1-235ENST00000537033 C6orf222P0C671 652 aaPredicted RBP16.44■□□□□ 0.22
SYNE1-235ENST00000537033 ALAS1P13196 640 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 ACLYP53396 1101 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 MFAP1P55081 439 aaKnown RBP16.44■□□□□ 0.22
SYNE1-235ENST00000537033 CCDC144BQ3MJ40 725 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 CCDC174Q6PII3 467 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 CCDC144CPQ8IYA2 1237 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 PCSK9Q8NBP7 692 aaKnown RBP16.44■□□□□ 0.22
SYNE1-235ENST00000537033 DCAF4Q8WV16 495 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 RILPL2Q969X0 211 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 AGBL1Q96MI9 1066 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 TRERF1Q96PN7 1200 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 ZNF536O15090 1300 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 CCDC171Q6TFL3 1326 aa16.44■□□□□ 0.22
SYNE1-235ENST00000537033 LRRC37A2A6NM11 1700 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 ASB14A6NK59 587 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 DCDC2CA8MYV0 355 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 FGAP02671 866 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 FGRP09769 529 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 TOP1P11387 765 aaKnown RBP16.43■□□□□ 0.22
SYNE1-235ENST00000537033 RAG1P15918 1043 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 NMIQ13287 307 aaPredicted RBP16.43■□□□□ 0.22
SYNE1-235ENST00000537033 B4GALNT3Q6L9W6 998 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 SH3RF1Q7Z6J0 888 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 SLC17A8Q8NDX2 589 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 KLHDC9Q8NEP7 349 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 FGD4Q96M96 766 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 GLT1D1Q96MS3 346 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 A1CFQ9NQ94 594 aaKnown RBP16.43■□□□□ 0.22
SYNE1-235ENST00000537033 CCPG1Q9ULG6 757 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 PRR12Q9ULL5 1215 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 MROH7Q68CQ1 1323 aa16.43■□□□□ 0.22
SYNE1-235ENST00000537033 TRIM43BA6NCK2 446 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 HSPD1P10809 573 aaKnown RBP16.42■□□□□ 0.22
SYNE1-235ENST00000537033 PCP11498 1178 aaKnown RBP16.42■□□□□ 0.22
SYNE1-235ENST00000537033 CST5P28325 142 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-235ENST00000537033 CNTN2Q02246 1040 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 KCNA10Q16322 511 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 NOL8Q76FK4 1167 aaKnown RBP16.42■□□□□ 0.22
SYNE1-235ENST00000537033 SMC5Q8IY18 1101 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 FAM133AQ8N9E0 248 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 VTI1AQ96AJ9 217 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 TRIM43Q96BQ3 446 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-235ENST00000537033 TMEM39AQ9NV64 488 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 MTMR10Q9NXD2 777 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 STXBP5LQ9Y2K9 1186 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 LAMA4Q16363 1823 aa16.42■□□□□ 0.22
SYNE1-235ENST00000537033 KIAA0355O15063 1070 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 ICAM1P05362 532 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 NOVP48745 357 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 HAND2P61296 217 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 SHHQ15465 462 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 ZNF697Q5TEC3 545 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 FAM109BQ6ICB4 259 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-235ENST00000537033 MFSD6Q6ZSS7 791 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 RASGRP2Q7LDG7 609 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 ANKRD33Q7Z3H0 272 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 ZNF589Q86UQ0 364 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-235ENST00000537033 CHD1LQ86WJ1 897 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 TOX2Q96NM4 488 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 UPF3AQ9H1J1 476 aaKnown RBP16.41■□□□□ 0.22
SYNE1-235ENST00000537033 RNF41Q9H4P4 317 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-235ENST00000537033 TCP11L1Q9NUJ3 509 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 ELP1O95163 1332 aa16.41■□□□□ 0.22
SYNE1-235ENST00000537033 MYADML2A6NDP7 307 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 ASGR1P07306 291 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 GJA9P57773 515 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 SNAP25P60880 206 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 TNFAIP2Q03169 654 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 GNASQ5JWF2 1037 aa16.4■□□□□ 0.22
SYNE1-235ENST00000537033 AKNAD1Q5T1N1 836 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms