RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ACBD3Q9H3P7 528 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 PIH1D3Q9NQM4 214 aaKnown RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 RMND1Q9NWS8 449 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 CWC15Q9P013 229 aaKnown RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 PPP1R1BQ9UD71 204 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 CDC23Q9UJX2 597 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 RAB21Q9UL25 225 aa7.17□□□□□ -1.26
SYNE1-233ENST00000535896 PDS5AQ29RF7 1337 aaKnown RBP7.17□□□□□ -1.26
SYNE1-233ENST00000535896 TNRC6CQ9HCJ0 1690 aaKnown RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 LRRC10BA6NIK2 292 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 MAP2K7O14733 419 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 NPHP1O15259 732 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 POLR2DO15514 142 aaKnown RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 MFAP3LO75121 409 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 DDAH1O94760 285 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 TBC1D8O95759 1140 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 APPP05067 770 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 GPTP24298 496 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 KRT2P35908 639 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 TOB1P50616 345 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 ST5P78524 1137 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 CUL4BQ13620 913 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 SMYD5Q6GMV2 418 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 BICDL1Q6ZP65 573 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 APTXQ7Z2E3 356 aaKnown RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 FOXP4Q8IVH2 680 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 IQUBQ8NA54 791 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 FANCBQ8NB91 859 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 EHBP1Q8NDI1 1231 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 RUBCNQ92622 972 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 ESR2Q92731 530 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 PHKBQ93100 1093 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 GREM2Q9H772 168 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 EPB41L4AQ9HCS5 686 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 ZSWIM5Q9P217 1185 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 ADD3Q9UEY8 706 aaKnown RBP7.16□□□□□ -1.26
SYNE1-233ENST00000535896 CD2APQ9Y5K6 639 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 KIF13BQ9NQT8 1826 aa7.16□□□□□ -1.26
SYNE1-233ENST00000535896 TESPA1A2RU30 521 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 CTAGE9A4FU28 777 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 GSG1L2A8MUP6 293 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 BTBD18B2RXH4 712 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 TMEM232C9JQI7 657 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 TULP2O00295 520 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 IRS4O14654 1257 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 FANCGO15287 622 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 PRPF3O43395 683 aaKnown RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 MBD4O95243 580 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 NTSR2O95665 410 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 FGRP09769 529 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 PPP1R2P41236 205 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 CHMP4BP1P59074 171 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 AKAP17AQ02040 695 aaKnown RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 FMR1Q06787 632 aaKnown RBP eCLIP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 PDE4BQ07343 736 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 ARL6IP4Q66PJ3 421 aaKnown RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 PRR5LQ6MZQ0 368 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 HDXQ7Z353 690 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF654Q8IZM8 581 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 CCDC12Q8WUD4 166 aaPredicted RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 FAM89AQ96GI7 184 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 AIFM3Q96NN9 605 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 CLIC6Q96NY7 704 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 CDC5LQ99459 802 aaKnown RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 UBAC1Q9BSL1 405 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 PHF20Q9BVI0 1012 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 BRIP1Q9BX63 1249 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 FUT8Q9BYC5 575 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 VIPAS39Q9H9C1 493 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 MAGEF1Q9HAY2 307 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 MED4Q9NPJ6 270 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 GJB4Q9NTQ9 266 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 LIMA1Q9UHB6 759 aaKnown RBP7.15□□□□□ -1.26
SYNE1-233ENST00000535896 SERTAD1Q9UHV2 236 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 WWC3Q9ULE0 1092 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 ADGRG1Q9Y653 693 aa7.15□□□□□ -1.26
SYNE1-233ENST00000535896 BAZ2AQ9UIF9 1905 aaKnown RBP7.15□□□□□ -1.27
SYNE1-233ENST00000535896 A0A1W2PQC6 194 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 RPS6KA5O75582 802 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 IVLP07476 585 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 PDE6BP35913 854 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 PHKA1P46020 1223 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 TDO2P48775 406 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 COPS2P61201 443 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 TGFB2P61812 414 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 ATP2C1P98194 919 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-233ENST00000535896 DPYDQ12882 1025 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 SMC1AQ14683 1233 aaKnown RBP7.14□□□□□ -1.27
SYNE1-233ENST00000535896 SEC23AQ15436 765 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 SLC10A5Q5PT55 438 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 SUSD4Q5VX71 490 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 WDR93Q6P2C0 686 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 PI16Q6UXB8 463 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 CYP26C1Q6V0L0 522 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 TOGARAM2Q6ZUX3 1019 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 NUDT18Q6ZVK8 323 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 IGSF22Q8N9C0 903 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 NOC3LQ8WTT2 800 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms