RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 ELF2Q15723 593 aa19.94■□□□□ 0.78
SFSWAP-203ENST00000535236 DDX41Q9UJV9 622 aaKnown RBP19.94■□□□□ 0.78
SFSWAP-203ENST00000535236 ATP10AO60312 1499 aa19.94■□□□□ 0.78
SFSWAP-203ENST00000535236 STX2P32856 288 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 ADKP55263 362 aaKnown RBP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 ARHGEF6Q15052 776 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 TSNAXIP1Q2TAA8 658 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 TTLL7Q6ZT98 887 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 DPP9Q86TI2 863 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 NME8Q8N427 588 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 MGARPQ8TDB4 240 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 RABEP2Q9H5N1 569 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 KCNK3O14649 394 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 TLR3O15455 904 aaKnown RBP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 PPP1R12CQ9BZL4 782 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 CCDC68Q9H2F9 335 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 PLEKHA4Q9H4M7 779 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 BCAP29Q9UHQ4 241 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 SAR1BQ9Y6B6 198 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 RGS16O15492 202 aaPredicted RBP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 TROVE2P10155 538 aaKnown RBP eCLIP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 CCNA1P78396 465 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 USPL1Q5W0Q7 1092 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 DIXDC1Q155Q3 683 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 POTEDQ86YR6 584 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 PPM1KQ8N3J5 372 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 XPO4Q9C0E2 1151 aaKnown RBP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 METTL14Q9HCE5 456 aaKnown RBP19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 ARHGEF12Q9NZN5 1544 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
SFSWAP-203ENST00000535236 RNF40O75150 1001 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 CCDC127Q96BQ5 260 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 KRIT1O00522 736 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 BUB1BO60566 1050 aaPredicted RBP19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 RPGRIP1Q96KN7 1286 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 ZNF804BA4D1E1 1349 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 FOSP01100 380 aaPredicted RBP19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 PIK3CAP42336 1068 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 AOC3Q16853 763 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 RSPH3Q86UC2 560 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 KIF24Q5T7B8 1368 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 PPEF1O14829 653 aaPredicted RBP19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 IGSF3O75054 1194 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 ABI1Q8IZP0 508 aa19.92■□□□□ 0.78
SFSWAP-203ENST00000535236 RBBP5Q15291 538 aaKnown RBP19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 PHLDB2Q86SQ0 1253 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 SCYL1Q96KG9 808 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 APOL6Q9BWW8 343 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 PCDHA1Q9Y5I3 950 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 MED23Q9ULK4 1368 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 XPOTO43592 962 aaKnown RBP19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 HSPD1P10809 573 aaKnown RBP19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 ADAM9Q13443 819 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 NUB1Q9Y5A7 615 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 A0A0D9SFI3 127 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 PPP2R5EQ16537 467 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 SYNJ2BP-COX16A0A087WUM0 186 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 TXNDC9O14530 226 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 SH2D4BQ5SQS7 431 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 NXNQ6DKJ4 435 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 CSRNP1Q96S65 589 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 COX16Q9P0S2 106 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 KIAA1468Q9P260 1216 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 SHANK2Q9UPX8 1470 aa19.91■□□□□ 0.78
SFSWAP-203ENST00000535236 GOLGA8CPA6NN73 597 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 KIF3CO14782 793 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 RNF8O76064 485 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 CCDC170Q8IYT3 715 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 POMGNT1Q8WZA1 660 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 HYOU1Q9Y4L1 999 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 MAPKBP1O60336 1514 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 GTPBP6O43824 516 aaPredicted RBP19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 CTNNA1P35221 906 aaKnown RBP19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 POLR2FP61218 127 aaKnown RBP19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 RASSF4Q9H2L5 321 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 RABGAP1Q9Y3P9 1069 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 PFKFB2O60825 505 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 GSTA1P08263 222 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 GSTA2P09210 222 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 OSBPP22059 807 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 PNMA8AQ86V59 439 aaPredicted RBP19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 CCDC13Q8IYE1 715 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 KCNQ3O43525 872 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 PPFIA4O75335 1185 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 ARHGAP25P42331 645 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 RINT1Q6NUQ1 792 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 XDHP47989 1333 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 MAP3K15Q6ZN16 1313 aa19.9■□□□□ 0.78
SFSWAP-203ENST00000535236 ADD1P35611 737 aaKnown RBP19.89■□□□□ 0.78
SFSWAP-203ENST00000535236 GUCY2FP51841 1108 aa19.89■□□□□ 0.78
SFSWAP-203ENST00000535236 SF3A3Q12874 501 aaKnown RBP eCLIP19.89■□□□□ 0.785e-7■■■■■ 31.3
SFSWAP-203ENST00000535236 LRRC24Q50LG9 513 aa19.89■□□□□ 0.78
SFSWAP-203ENST00000535236 SLC39A2Q9NP94 309 aa19.89■□□□□ 0.78
SFSWAP-203ENST00000535236 SEPT9Q9UHD8 586 aaPredicted RBP19.89■□□□□ 0.78
SFSWAP-203ENST00000535236 FAM26FQ5R3K3 315 aa19.89■□□□□ 0.77
SFSWAP-203ENST00000535236 IPO11Q9UI26 975 aaKnown RBP19.89■□□□□ 0.77
SFSWAP-203ENST00000535236 NPC1L1Q9UHC9 1359 aa19.89■□□□□ 0.77
SFSWAP-203ENST00000535236 PSDA5PKW4 1024 aaPredicted RBP19.89■□□□□ 0.77
SFSWAP-203ENST00000535236 A6NJR5 290 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms