RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 K7ESM1 405 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 TNFRSF10CO14798 259 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 RGS13O14921 159 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 SUV39H1O43463 412 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 MPOP05164 745 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 KCNC1P48547 511 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 ERVFRD-1P60508 538 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 CLCQ05315 142 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 PAK2Q13177 524 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 RTP5Q14D33 572 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 HHIPL2Q6UWX4 724 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 GK5Q6ZS86 529 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 CEP128Q6ZU80 1094 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 LDHDQ86WU2 507 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 TAB3Q8N5C8 712 aaPredicted RBP5.75□□□□□ -1.49
USP48-215ENST00000534705 MAP6Q96JE9 813 aa5.75□□□□□ -1.49
USP48-215ENST00000534705 USP2O75604 605 aaPredicted RBP5.74□□□□□ -1.49
USP48-215ENST00000534705 RAG1P15918 1043 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 TCF3P15923 654 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 ARL4AP40617 200 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 SOX9P48436 509 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 TNNI2P48788 182 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 RNF4P78317 190 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 ZNF827Q17R98 1081 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 NLRC3Q7RTR2 1065 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 WAPLQ7Z5K2 1190 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 PHACTR4Q8IZ21 702 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 RBBP8NLQ8NC74 664 aaPredicted RBP5.74□□□□□ -1.49
USP48-215ENST00000534705 GPRASP2Q96D09 838 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 KREMEN1Q96MU8 473 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.74□□□□□ -1.49
USP48-215ENST00000534705 DCAF1Q9Y4B6 1507 aa5.74□□□□□ -1.49
USP48-215ENST00000534705 SSU72P8A0A1W2PR75 194 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 SHISA3A0PJX4 238 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 MCM4P33991 863 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 LAPTM5Q13571 262 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 ARSHQ5FYA8 562 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 IGDCC3Q8IVU1 814 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 TP53I13Q8NBR0 393 aaPredicted RBP5.73□□□□□ -1.49
USP48-215ENST00000534705 SYTL5Q8TDW5 730 aaPredicted RBP5.73□□□□□ -1.49
USP48-215ENST00000534705 ATG4CQ96DT6 458 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 CCSER2Q9H7U1 834 aa5.73□□□□□ -1.49
USP48-215ENST00000534705 AKAP8O43823 692 aaKnown RBP5.72□□□□□ -1.49
USP48-215ENST00000534705 UBOX5O94941 541 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 NME1P15531 152 aaKnown RBP5.72□□□□□ -1.49
USP48-215ENST00000534705 CHMP4BP1P59074 171 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 UBXN11Q5T124 520 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 INTS3Q68E01 1043 aaKnown RBP5.72□□□□□ -1.49
USP48-215ENST00000534705 GALNT18Q6P9A2 607 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 USHBP1Q8N6Y0 703 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 VWCEQ96DN2 955 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 KIF2CQ99661 725 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 TM9SF2Q99805 663 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 KLHL14Q9P2G3 628 aa5.72□□□□□ -1.49
USP48-215ENST00000534705 PRICKLE3O43900 615 aaPredicted RBP5.71□□□□□ -1.5
USP48-215ENST00000534705 BUB1BO60566 1050 aaPredicted RBP5.71□□□□□ -1.5
USP48-215ENST00000534705 EFEMP2O95967 443 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 GBP1P32455 592 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 RBM25P49756 843 aaKnown RBP5.71□□□□□ -1.5
USP48-215ENST00000534705 SLURP1P55000 103 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 PCBP3P57721 371 aaKnown RBP5.71□□□□□ -1.5
USP48-215ENST00000534705 DAGLBQ8NCG7 672 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 OR6P1Q8NGX9 317 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 ZNF428Q96B54 188 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 SEC16BQ96JE7 1060 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 FERD3LQ96RJ6 166 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 IGSF5Q9NSI5 407 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 SRRDQ9UH36 339 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 STRIP2Q9ULQ0 834 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 PCDHA5Q9Y5H7 936 aa5.71□□□□□ -1.5
USP48-215ENST00000534705 WTIPA6NIX2 430 aaPredicted RBP5.7□□□□□ -1.5
USP48-215ENST00000534705 SDHBP21912 280 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 MAGEA10P43363 369 aaPredicted RBP5.7□□□□□ -1.5
USP48-215ENST00000534705 RTP1P59025 263 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 ZXDAP98168 799 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 NMIQ13287 307 aaPredicted RBP5.7□□□□□ -1.5
USP48-215ENST00000534705 C9orf131Q5VYM1 1079 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 TMC6Q7Z403 805 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 HHIPL1Q96JK4 782 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 GINM1Q9NU53 330 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 USP40Q9NVE5 1235 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 TNFRSF10DQ9UBN6 386 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 BICRAQ9NZM4 1560 aa5.7□□□□□ -1.5
USP48-215ENST00000534705 CLEC3AO75596 197 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 ERCC5P28715 1186 aaPredicted RBP5.69□□□□□ -1.5
USP48-215ENST00000534705 RAB3GAP1Q15042 981 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 LSRQ86X29 649 aaPredicted RBP5.69□□□□□ -1.5
USP48-215ENST00000534705 ZNF655Q8N720 491 aaPredicted RBP5.69□□□□□ -1.5
USP48-215ENST00000534705 C19orf47Q8N9M1 422 aaKnown RBP5.69□□□□□ -1.5
USP48-215ENST00000534705 LINC00116Q8NCU8 138 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 HDAC8Q9BY41 377 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 FOXP3Q9BZS1 431 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 ACBD3Q9H3P7 528 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 ANTXR1Q9H6X2 564 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 TCFL5Q9UL49 500 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 PPT2Q9UMR5 302 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 EFR3BQ9Y2G0 817 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 INPP5FQ9Y2H2 1132 aa5.69□□□□□ -1.5
USP48-215ENST00000534705 E9PSI1 815 aa5.68□□□□□ -1.5
USP48-215ENST00000534705 FFAR3O14843 346 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms