RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 ADD3Q9UEY8 706 aaKnown RBP12.23□□□□□ -0.45
CSDE1-217ENST00000534699 CNGA1P29973 690 aa12.23□□□□□ -0.45
CSDE1-217ENST00000534699 CTDSPL2Q05D32 466 aa12.23□□□□□ -0.45
CSDE1-217ENST00000534699 LRIT3Q3SXY7 679 aa12.23□□□□□ -0.45
CSDE1-217ENST00000534699 ASPRV1Q53RT3 343 aa12.23□□□□□ -0.45
CSDE1-217ENST00000534699 FAM47AQ5JRC9 791 aa12.23□□□□□ -0.45
CSDE1-217ENST00000534699 DIS3LQ8TF46 1054 aaKnown RBP12.23□□□□□ -0.45
CSDE1-217ENST00000534699 KIFC2Q96AC6 838 aa12.23□□□□□ -0.45
CSDE1-217ENST00000534699 ELP1O95163 1332 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 PEX10O60683 326 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 PRDM1O75626 825 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 FXR1P51114 621 aaKnown RBP eCLIP12.22□□□□□ -0.451e-6■■■□□ 18.2
CSDE1-217ENST00000534699 LRRC41Q15345 812 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 SYDE2Q5VT97 1194 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 SLC39A5Q6ZMH5 540 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 LRRC47Q8N1G4 583 aaKnown RBP12.22□□□□□ -0.45
CSDE1-217ENST00000534699 ANKRD35Q8N283 1001 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 KLHDC9Q8NEP7 349 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 VTA1Q9NP79 307 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 PRR12Q9ULL5 1215 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 STX8Q9UNK0 236 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 IQSEC1Q6DN90 963 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 TEX2Q8IWB9 1127 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 NUP133Q8WUM0 1156 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 TMEM47Q9BQJ4 181 aa12.22□□□□□ -0.45
CSDE1-217ENST00000534699 ZNF536O15090 1300 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 POTEB2H3BUK9 544 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 NKRFO15226 690 aaKnown RBP eCLIP12.21□□□□□ -0.45
CSDE1-217ENST00000534699 ZEB2O60315 1214 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 GJA9P57773 515 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 ZNF543Q08ER8 600 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 VPS53Q5VIR6 699 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 C7orf61Q8IZ16 206 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 RAVER2Q9HCJ3 691 aaKnown RBP12.21□□□□□ -0.45
CSDE1-217ENST00000534699 XPNPEP3Q9NQH7 507 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 RNF146Q9NTX7 359 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 PRKAG2Q9UGJ0 569 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 U3KPZ7 1027 aaPredicted RBP12.21□□□□□ -0.45
CSDE1-217ENST00000534699 PCNTO95613 3336 aa12.21□□□□□ -0.45
CSDE1-217ENST00000534699 ACVR2BQ13705 512 aa12.21□□□□□ -0.46
CSDE1-217ENST00000534699 FAM109BQ6ICB4 259 aaPredicted RBP12.21□□□□□ -0.46
CSDE1-217ENST00000534699 CHRDL2Q6WN34 429 aa12.21□□□□□ -0.46
CSDE1-217ENST00000534699 DNERQ8NFT8 737 aa12.21□□□□□ -0.46
CSDE1-217ENST00000534699 NUP88Q99567 741 aaPredicted RBP12.21□□□□□ -0.46
CSDE1-217ENST00000534699 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.21□□□□□ -0.46
CSDE1-217ENST00000534699 RAD21O60216 631 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 ZNF589Q86UQ0 364 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-217ENST00000534699 TRERF1Q96PN7 1200 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 MAP3K14Q99558 947 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 ABCB11O95342 1321 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 RBM47A0AV96 593 aaKnown RBP12.2□□□□□ -0.46
CSDE1-217ENST00000534699 KPNA6O60684 536 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 ADAMTS4O75173 837 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 SNAI1O95863 264 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-217ENST00000534699 PDHBP11177 359 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 MCCP23508 829 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 LRRC26Q2I0M4 334 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 CCDC174Q6PII3 467 aa12.2□□□□□ -0.46
CSDE1-217ENST00000534699 LBHD1Q9BQE6 289 aaPredicted RBP12.2□□□□□ -0.46
CSDE1-217ENST00000534699 SUPT16HQ9Y5B9 1047 aaKnown RBP12.2□□□□□ -0.46
CSDE1-217ENST00000534699 RTP1P59025 263 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 GHRHRQ02643 423 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 IKQ13123 557 aaPredicted RBP12.19□□□□□ -0.46
CSDE1-217ENST00000534699 CCDC96Q2M329 555 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 ANKRD33Q7Z3H0 272 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 SENP6Q9GZR1 1112 aaPredicted RBP12.19□□□□□ -0.46
CSDE1-217ENST00000534699 RBM27Q9P2N5 1060 aaKnown RBP12.19□□□□□ -0.46
CSDE1-217ENST00000534699 RIPK3Q9Y572 518 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 B4GALNT3Q6L9W6 998 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 MCF2L2Q86YR7 1114 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 CPXCR1Q8N123 301 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 YTHDC1Q96MU7 727 aaKnown RBP12.19□□□□□ -0.46
CSDE1-217ENST00000534699 CCPG1Q9ULG6 757 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 TACC3Q9Y6A5 838 aa12.19□□□□□ -0.46
CSDE1-217ENST00000534699 KIAA0355O15063 1070 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 SMARCA1P28370 1054 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 CCSAPQ6IQ19 270 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-217ENST00000534699 ARMCX2Q7L311 632 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 TDHQ8IZJ6 230 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 ZSCAN10Q96SZ4 725 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-217ENST00000534699 KATNBL1Q9H079 304 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 KAT14Q9H8E8 782 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 A1CFQ9NQ94 594 aaKnown RBP12.18□□□□□ -0.46
CSDE1-217ENST00000534699 TOMM22Q9NS69 142 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 LCTP09848 1927 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 TRDNQ13061 729 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 FGD4Q96M96 766 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 CYP39A1Q9NYL5 469 aa12.18□□□□□ -0.46
CSDE1-217ENST00000534699 TMEM265A0A087WTH1 108 aa12.17□□□□□ -0.46
CSDE1-217ENST00000534699 TLR3O15455 904 aaKnown RBP12.17□□□□□ -0.46
CSDE1-217ENST00000534699 PGK2P07205 417 aa12.17□□□□□ -0.46
CSDE1-217ENST00000534699 CWC27Q6UX04 472 aaKnown RBP12.17□□□□□ -0.46
CSDE1-217ENST00000534699 TBC1D10CQ8IV04 446 aa12.17□□□□□ -0.46
CSDE1-217ENST00000534699 A0A0U1RQG5 324 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-217ENST00000534699 ALAS1P13196 640 aa12.16□□□□□ -0.46
CSDE1-217ENST00000534699 MAGEA10P43363 369 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-217ENST00000534699 PTPN11Q06124 597 aaPredicted RBP12.16□□□□□ -0.46
CSDE1-217ENST00000534699 SART3Q15020 963 aaKnown RBP12.16□□□□□ -0.46
CSDE1-217ENST00000534699 RRP12Q5JTH9 1297 aaKnown RBP12.16□□□□□ -0.46
CSDE1-217ENST00000534699 STK11IPQ8N1F8 1099 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms