RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 ZKSCAN5Q9Y2L8 839 aa3.89□□□□□ -1.79
CSDE1-216ENST00000534389 MYBBP1AQ9BQG0 1328 aaKnown RBP3.89□□□□□ -1.79
CSDE1-216ENST00000534389 EIF3AQ14152 1382 aaKnown RBP3.89□□□□□ -1.79
CSDE1-216ENST00000534389 ANKRD30BQ9BXX2 1392 aa3.89□□□□□ -1.79
CSDE1-216ENST00000534389 PLEKHH1Q9ULM0 1364 aa3.89□□□□□ -1.79
CSDE1-216ENST00000534389 ARHGAP31Q2M1Z3 1444 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 CFAP43Q8NDM7 1665 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 SCO2A0A1W2PP80 73 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 H3BS24 57 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 GJB6O95452 261 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 EOMESO95936 686 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 APPP05067 770 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 CEACAM5P06731 702 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 ITGB7P26010 798 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 TNNT2P45379 298 aaPredicted RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 ZNF445P59923 1031 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 IRX3P78415 501 aaPredicted RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 AUHQ13825 339 aaKnown RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 RAB3GAP1Q15042 981 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 IFI16Q16666 785 aaKnown RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 CCDC144BQ3MJ40 725 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 PRSS36Q5K4E3 855 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 TAF3Q5VWG9 929 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 DCAF15Q66K64 600 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 SEZ6L2Q6UXD5 910 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 DPH6Q7L8W6 267 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 TMEM192Q8IY95 271 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 C7orf61Q8IZ16 206 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 CRACR2BQ8N4Y2 399 aaPredicted RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 ADCY4Q8NFM4 1077 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 DNAJB8Q8NHS0 232 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 NETO1Q8TDF5 533 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 FGD4Q96M96 766 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 ZSWIM5Q9P217 1185 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 ZNF214Q9UL59 606 aaPredicted RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 ROCK2O75116 1388 aaKnown RBP3.88□□□□□ -1.79
CSDE1-216ENST00000534389 KIF15Q9NS87 1388 aa3.88□□□□□ -1.79
CSDE1-216ENST00000534389 FMN1Q68DA7 1419 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 MIA2Q96PC5 1412 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 SCAPERQ9BY12 1400 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 MBD5Q9P267 1494 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 CUX1P39880 1505 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 ZMYM4Q5VZL5 1548 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 ZNF608Q9ULD9 1512 aaPredicted RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 TMEM265A0A087WTH1 108 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 ANKRD34BA5PLL1 514 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 IQCA1LA6NCM1 817 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 B2RBV5 119 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 IGF2BP3O00425 579 aaKnown RBP eCLIP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 COBLO75128 1261 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 LRRN2O75325 713 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 TGFB1P01137 390 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 FOSL1P15407 271 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 MSNP26038 577 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 U2AF2P26368 475 aaKnown RBP eCLIP3.87□□□□□ -1.792e-16■■■■■ 35.9
CSDE1-216ENST00000534389 NMIQ13287 307 aaPredicted RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 IKZF1Q13422 519 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 RALBP1Q15311 655 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 INTS5Q6P9B9 1019 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 POMZP3Q6PJE2 187 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 SMC5Q8IY18 1101 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 SHISA5Q8N114 240 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PLD6Q8N2A8 252 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 C17orf53Q8N3J3 647 aaPredicted RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 LRRN4CLQ8ND94 238 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PIWIL2Q8TC59 973 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PPP1R13LQ8WUF5 828 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 ANKRD7Q92527 254 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 BRF1Q92994 677 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 UBE2FQ969M7 185 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 HRASLS5Q96KN8 279 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 DEPDC7Q96QD5 511 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 MPHOSPH9Q99550 1183 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 HAUS7Q99871 368 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 POLR3GLQ9BT43 218 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 LNPKQ9C0E8 428 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 NOL6Q9H6R4 1146 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PCMTD2Q9NV79 361 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 GFOD1Q9NXC2 390 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PFDN2Q9UHV9 154 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 SF3B6Q9Y3B4 125 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PCF11O94913 1555 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 THOC2Q8NI27 1593 aaKnown RBP3.87□□□□□ -1.79
CSDE1-216ENST00000534389 ZNF521Q96K83 1311 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 LTBP3Q9NS15 1303 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 TOP2BQ02880 1626 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 INSRP06213 1382 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 PARD3Q8TEW0 1356 aa3.87□□□□□ -1.79
CSDE1-216ENST00000534389 HECW1Q76N89 1606 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 BTBD11A6QL63 1104 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 PRR33A8MZF0 331 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 C9IYK1 514 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 PDPK1O15530 556 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 CLSTN1O94985 981 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 EPHX1P07099 455 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 CD247P20963 164 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 TPP2P29144 1249 aaPredicted RBP3.86□□□□□ -1.79
CSDE1-216ENST00000534389 SSTR4P31391 388 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 MCM5P33992 734 aa3.86□□□□□ -1.79
CSDE1-216ENST00000534389 CLCN7P51798 805 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms