RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ZNF451Q9Y4E5 1061 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 LTBP3Q9NS15 1303 aa4.46□□□□□ -1.7
CD44-238ENST00000534296 A0A1W2PQ45 241 aaPredicted RBP4.45□□□□□ -1.7
CD44-238ENST00000534296 A0A1W2PQJ5 194 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 A0A1W2PQY0 241 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 TMEM82A0PJX8 343 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 OR14I1A6ND48 311 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 H0Y8X5 98 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 NOP56O00567 594 aaKnown RBP4.45□□□□□ -1.7
CD44-238ENST00000534296 NFIBO00712 420 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 SHOXO15266 292 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 EPHX1P07099 455 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 CD3EP07766 207 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 TRHRP34981 398 aaPredicted RBP4.45□□□□□ -1.7
CD44-238ENST00000534296 CTSKP43235 329 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 ZC3H6P61129 1189 aaKnown RBP4.45□□□□□ -1.7
CD44-238ENST00000534296 LAPTM5Q13571 262 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 PPP2R5DQ14738 602 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 FXNQ16595 210 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 HLA-DQA1Q5Y7H0 255 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 LARP1BQ659C4 914 aaKnown RBP4.45□□□□□ -1.7
CD44-238ENST00000534296 ADCY4Q8NFM4 1077 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 PPP1R14AQ96A00 147 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 HHIPL1Q96JK4 782 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 SLC26A8Q96RN1 970 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 APBA2Q99767 749 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 CRTAC1Q9NQ79 661 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 AP5S1Q9NUS5 200 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 PRKAG3Q9UGI9 489 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 PCDHB10Q9UN67 800 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 MINPP1Q9UNW1 487 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 GPR55Q9Y2T6 319 aaPredicted RBP4.45□□□□□ -1.7
CD44-238ENST00000534296 ZNF281Q9Y2X9 895 aa4.45□□□□□ -1.7
CD44-238ENST00000534296 TRBV23OR9-2A0A075B6M9 112 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 AGRPO00253 132 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 SMAD7O15105 426 aaKnown RBP4.44□□□□□ -1.7
CD44-238ENST00000534296 CBFA2T2O43439 604 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 TMEM253P0C7T8 217 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 AMPD2Q01433 879 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 GRB10Q13322 594 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 ADGRF1Q5T601 910 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 ZNF648Q5T619 568 aaPredicted RBP4.44□□□□□ -1.7
CD44-238ENST00000534296 EEF1DP3Q658K8 133 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 TMEM132EQ6IEE7 984 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 PRR23BQ6ZRT6 265 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 SLC43A3Q8NBI5 491 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 TINF2Q9BSI4 451 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 G6PC3Q9BUM1 346 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 SLC12A9Q9BXP2 914 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 KLHL25Q9H0H3 589 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 ERVK13-1Q9NX77 482 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.44□□□□□ -1.7
CD44-238ENST00000534296 MRVI1Q9Y6F6 885 aa4.44□□□□□ -1.7
CD44-238ENST00000534296 FADS2P1A8MWK0 482 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.43□□□□□ -1.7
CD44-238ENST00000534296 ABLIM1O14639 778 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 PSPNO60542 156 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 C8AP07357 584 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 PNLIPP16233 465 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 RAP1GAPP47736 663 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 SEPHS1P49903 392 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 RCSD1Q6JBY9 416 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 SYDE1Q6ZW31 735 aaPredicted RBP4.43□□□□□ -1.7
CD44-238ENST00000534296 NLRX1Q86UT6 975 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 CABP7Q86V35 215 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 NUP43Q8NFH3 380 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 RCC1LQ96I51 464 aaKnown RBP4.43□□□□□ -1.7
CD44-238ENST00000534296 FGD4Q96M96 766 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 LRP2BPQ9P2M1 347 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 CGGBP1Q9UFW8 167 aaPredicted RBP4.43□□□□□ -1.7
CD44-238ENST00000534296 AKT3Q9Y243 479 aa4.43□□□□□ -1.7
CD44-238ENST00000534296 TCAF2A6NFQ2 919 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 RBAK-RBAKDNI3L0D1 243 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 HRKO00198 91 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 PEX10O60683 326 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 SEMA7AO75326 666 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 DDAH1O94760 285 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 TSPAN15O95858 294 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 MPOP05164 745 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 FGRP09769 529 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 PRKCAP17252 672 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 CYP4F8P98187 520 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 HSF5Q4G112 596 aaPredicted RBP4.42□□□□□ -1.7
CD44-238ENST00000534296 TIGD5Q53EQ6 642 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 ZPBP2Q6X784 338 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 EEPD1Q7L9B9 569 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 ZNF605Q86T29 641 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 SIRT2Q8IXJ6 389 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 FAM178BQ8IXR5 827 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 FAM169BQ8N8A8 192 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 BVESQ8NE79 360 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 KLHL6Q8WZ60 621 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 PTCHD1Q96NR3 888 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 PPP1R1BQ9UD71 204 aaPredicted RBP4.42□□□□□ -1.7
CD44-238ENST00000534296 BACE2Q9Y5Z0 518 aa4.42□□□□□ -1.7
CD44-238ENST00000534296 STXBP3O00186 592 aa4.41□□□□□ -1.7
CD44-238ENST00000534296 U2SURPO15042 1029 aaKnown RBP4.41□□□□□ -1.7
CD44-238ENST00000534296 FGF10O15520 208 aaPredicted RBP4.41□□□□□ -1.7
CD44-238ENST00000534296 CORO7P57737 925 aa4.41□□□□□ -1.7
CD44-238ENST00000534296 DPY19L1Q2PZI1 675 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms