RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ABHD16BQ9H3Z7 469 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 STARD7Q9NQZ5 370 aa13.48□□□□□ -0.25
VPS28-214ENST00000531032 ZNF536O15090 1300 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 UNC80Q8N2C7 3258 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 MYADML2A6NDP7 307 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 ADCY6O43306 1168 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 PLA2G6O60733 806 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 SLC1A4P43007 532 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 RRP1P56182 461 aaKnown RBP13.47□□□□□ -0.25
VPS28-214ENST00000531032 KCNA10Q16322 511 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 ZNF697Q5TEC3 545 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 CCDC129Q6ZRS4 1044 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 ARMCX2Q7L311 632 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 CHURC1Q8WUH1 139 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 STAG1Q8WVM7 1258 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 KATNBL1Q9H079 304 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 UPF3AQ9H1J1 476 aaKnown RBP13.47□□□□□ -0.25
VPS28-214ENST00000531032 ACAD9Q9H845 621 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 IL17RBQ9NRM6 502 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 ANAPC4Q9UJX5 808 aa13.47□□□□□ -0.25
VPS28-214ENST00000531032 ELP1O95163 1332 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 TSPY2A6NKD2 308 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 MCCP23508 829 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 NOVP48745 357 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 SMAD3P84022 425 aaKnown RBP13.46□□□□□ -0.25
VPS28-214ENST00000531032 CNTN2Q02246 1040 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 FAAP100Q0VG06 881 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 TKFCQ3LXA3 575 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 CCDC144BQ3MJ40 725 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 CCDC144CPQ8IYA2 1237 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 FAM133AQ8N9E0 248 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 PCSK9Q8NBP7 692 aaKnown RBP13.46□□□□□ -0.25
VPS28-214ENST00000531032 EVI5LQ96CN4 794 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 AGBL1Q96MI9 1066 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 FAM161BQ96MY7 647 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 A1CFQ9NQ94 594 aaKnown RBP13.46□□□□□ -0.25
VPS28-214ENST00000531032 HOMER2Q9NSB8 354 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 STX8Q9UNK0 236 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 LRRC37A2A6NM11 1700 aa13.46□□□□□ -0.25
VPS28-214ENST00000531032 CDH23Q9H251 3354 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 DCDC2CA8MYV0 355 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 ORC4O43929 436 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 NMT2O60551 498 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 FGRP09769 529 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 C6orf222P0C671 652 aaPredicted RBP13.45□□□□□ -0.26
VPS28-214ENST00000531032 RAG1P15918 1043 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 EPHB4P54760 987 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 GJA9P57773 515 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 NKX3-2P78367 333 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 IRX5P78411 483 aaPredicted RBP13.45□□□□□ -0.26
VPS28-214ENST00000531032 CTDSPL2Q05D32 466 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 ANKRD45Q5TZF3 282 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 VPS53Q5VIR6 699 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 RCSD1Q6JBY9 416 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 GLT1D1Q96MS3 346 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 YTHDC1Q96MU7 727 aaKnown RBP13.45□□□□□ -0.26
VPS28-214ENST00000531032 SPC25Q9HBM1 224 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 INCENPQ9NQS7 918 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 RNF146Q9NTX7 359 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 TMEM39AQ9NV64 488 aa13.45□□□□□ -0.26
VPS28-214ENST00000531032 ISY1Q9ULR0 285 aaKnown RBP13.45□□□□□ -0.26
VPS28-214ENST00000531032 MROH7Q68CQ1 1323 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 CTAGE5O15320 804 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 ASGR1P07306 291 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 CDK7P50613 346 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 PDE1AP54750 535 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 FPGSQ05932 587 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 IKQ13123 557 aaPredicted RBP13.44□□□□□ -0.26
VPS28-214ENST00000531032 HDAC1Q13547 482 aaPredicted RBP13.44□□□□□ -0.26
VPS28-214ENST00000531032 ALX1Q15699 326 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 KCTD1Q719H9 257 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 RASGRP2Q7LDG7 609 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 RNPC3Q96LT9 517 aaKnown RBP13.44□□□□□ -0.26
VPS28-214ENST00000531032 HELLSQ9NRZ9 838 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 ZBTB47Q9UFB7 747 aaPredicted RBP13.44□□□□□ -0.26
VPS28-214ENST00000531032 TBX21Q9UL17 535 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 PRR12Q9ULL5 1215 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 CUL9Q8IWT3 2517 aa13.44□□□□□ -0.26
VPS28-214ENST00000531032 ASTN1O14525 1302 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 EYSQ5T1H1 3165 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 LCTP09848 1927 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 A0A0U1RQG5 324 aaPredicted RBP13.43□□□□□ -0.26
VPS28-214ENST00000531032 SOWAHBA6NEL2 793 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 ASB14A6NK59 587 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 RANBP6O60518 1105 aaKnown RBP13.43□□□□□ -0.26
VPS28-214ENST00000531032 TIMP1P01033 207 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 GNASQ5JWF2 1037 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 TICAM2Q86XR7 235 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 CHMP4CQ96CF2 233 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 TRERF1Q96PN7 1200 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 CRBNQ96SW2 442 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 CDX2Q99626 313 aaPredicted RBP13.43□□□□□ -0.26
VPS28-214ENST00000531032 TTYH1Q9H313 450 aaPredicted RBP13.43□□□□□ -0.26
VPS28-214ENST00000531032 SEMA6BQ9H3T3 888 aa13.43□□□□□ -0.26
VPS28-214ENST00000531032 ZMYM6O95789 1325 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 TMEM265A0A087WTH1 108 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 A0A0D9SFI3 127 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.42□□□□□ -0.26
VPS28-214ENST00000531032 ARVCFO00192 962 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 ALAS1P13196 640 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms