RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 ECM2O94769 699 aaPredicted RBP24.8■■□□□ 1.56
CAPN1-220ENST00000530567 TAL1P17542 331 aaPredicted RBP24.8■■□□□ 1.56
CAPN1-220ENST00000530567 STAT3P40763 770 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 METAP2P50579 478 aaKnown RBP eCLIP24.8■■□□□ 1.56
CAPN1-220ENST00000530567 CCDC174Q6PII3 467 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 CMTR1Q8N1G2 835 aaKnown RBP24.8■■□□□ 1.56
CAPN1-220ENST00000530567 SPZ1Q9BXG8 430 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 PRDM10Q9NQV6 1147 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 TPCN1Q9ULQ1 816 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 RIPK3Q9Y572 518 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 DOCK3Q8IZD9 2030 aa24.8■■□□□ 1.56
CAPN1-220ENST00000530567 PSMC4P43686 418 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 GNAQP50148 359 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 CCNA1P78396 465 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 FUT2Q10981 343 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 ANKRD1Q15327 319 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 CDC37Q16543 378 aaPredicted RBP24.79■■□□□ 1.56
CAPN1-220ENST00000530567 SNRNP48Q6IEG0 339 aaKnown RBP24.79■■□□□ 1.56
CAPN1-220ENST00000530567 SHCBP1Q8NEM2 672 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 ZNF274Q96GC6 653 aaPredicted RBP24.79■■□□□ 1.56
CAPN1-220ENST00000530567 AGBL1Q96MI9 1066 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 LZTS2Q9BRK4 669 aa24.79■■□□□ 1.56
CAPN1-220ENST00000530567 RBM28Q9NW13 759 aaKnown RBP24.79■■□□□ 1.56
CAPN1-220ENST00000530567 ICAM1P05362 532 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 ERCC3P19447 782 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 SMARCA1P28370 1054 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 VAT1LQ9HCJ6 419 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 CTDP1Q9Y5B0 961 aaPredicted RBP24.78■■□□□ 1.56
CAPN1-220ENST00000530567 MAPK4P31152 587 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 ADD1P35611 737 aaKnown RBP24.78■■□□□ 1.56
CAPN1-220ENST00000530567 FCGRTP55899 365 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 QRICH1Q2TAL8 776 aa24.78■■□□□ 1.56
CAPN1-220ENST00000530567 PLXNB2O15031 1838 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 CNTNAP5Q8WYK1 1306 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 DHX16O60231 1041 aaKnown RBP24.77■■□□□ 1.56
CAPN1-220ENST00000530567 PPP1R11O60927 126 aaPredicted RBP24.77■■□□□ 1.56
CAPN1-220ENST00000530567 SLC25A27O95847 323 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 KIF22Q14807 665 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 PPP2R5BQ15173 497 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 GPR142Q7Z601 462 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 PIGSQ96S52 555 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 NCOA5Q9HCD5 579 aaKnown RBP24.77■■□□□ 1.56
CAPN1-220ENST00000530567 MYH6P13533 1939 aa24.77■■□□□ 1.56
CAPN1-220ENST00000530567 LARGE1O95461 756 aa24.76■■□□□ 1.55
CAPN1-220ENST00000530567 CCT2P78371 535 aaKnown RBP24.76■■□□□ 1.55
CAPN1-220ENST00000530567 NOL8Q76FK4 1167 aaKnown RBP24.76■■□□□ 1.55
CAPN1-220ENST00000530567 OTOP1Q7RTM1 612 aa24.76■■□□□ 1.55
CAPN1-220ENST00000530567 NCAPG2Q86XI2 1143 aa24.76■■□□□ 1.55
CAPN1-220ENST00000530567 MROH8Q9H579 483 aa24.76■■□□□ 1.55
CAPN1-220ENST00000530567 CCPG1Q9ULG6 757 aa24.76■■□□□ 1.55
CAPN1-220ENST00000530567 TNPO2O14787 897 aaKnown RBP24.75■■□□□ 1.55
CAPN1-220ENST00000530567 ZBTB5O15062 677 aa24.75■■□□□ 1.55
CAPN1-220ENST00000530567 FMNL1O95466 1100 aaPredicted RBP24.75■■□□□ 1.55
CAPN1-220ENST00000530567 COPB2P35606 906 aa24.75■■□□□ 1.55
CAPN1-220ENST00000530567 HOMER1Q86YM7 354 aa24.75■■□□□ 1.55
CAPN1-220ENST00000530567 ZNF236Q9UL36 1845 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 CCDC196A0A1B0GTZ2 297 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 PFKFB2O60825 505 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 STK3Q13188 491 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 NTRK3Q16288 839 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 ME3Q16798 604 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 PLEKHH3Q7Z736 793 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 CCDC82Q8N4S0 544 aa24.74■■□□□ 1.55
CAPN1-220ENST00000530567 CD2BP2O95400 341 aaKnown RBP24.73■■□□□ 1.55
CAPN1-220ENST00000530567 SLC4A3P48751 1232 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 SCRN1Q12765 414 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 WDR78Q5VTH9 848 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.73■■□□□ 1.55
CAPN1-220ENST00000530567 PIBF1Q8WXW3 757 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 HOMER2Q9NSB8 354 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 RNF146Q9NTX7 359 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 GJD2Q9UKL4 321 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 TRIM17Q9Y577 477 aa24.73■■□□□ 1.55
CAPN1-220ENST00000530567 PNMA6FA0A0J9YX94 578 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 GNRH1P01148 92 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 ALAS1P13196 640 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 TKFCQ3LXA3 575 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 MUM1L1Q5H9M0 696 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 MORN1Q5T089 497 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 CCAR1Q8IX12 1150 aaKnown RBP24.72■■□□□ 1.55
CAPN1-220ENST00000530567 CHST13Q8NET6 341 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 SRRDQ9UH36 339 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 GABRQQ9UN88 632 aa24.72■■□□□ 1.55
CAPN1-220ENST00000530567 HTTP42858 3142 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 hCG_1642624A0A1W2PR95 340 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 PTPREP23469 700 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 PRKCZQ05513 592 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 ST3GAL1Q11201 340 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 GRB14Q14449 540 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 USH1GQ495M9 461 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 CTU1Q7Z7A3 348 aaKnown RBP24.71■■□□□ 1.55
CAPN1-220ENST00000530567 FBXO11Q86XK2 927 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 CLEC4DQ8WXI8 215 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 USP6NLQ92738 828 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 COA7Q96BR5 231 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 RRP36Q96EU6 259 aaKnown RBP24.71■■□□□ 1.55
CAPN1-220ENST00000530567 TRERF1Q96PN7 1200 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 SLKQ9H2G2 1235 aaPredicted RBP24.71■■□□□ 1.55
CAPN1-220ENST00000530567 PNMA2Q9UL42 364 aa24.71■■□□□ 1.55
CAPN1-220ENST00000530567 LIMCH1Q9UPQ0 1083 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms