RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, human

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B2-208	ENST00000529994	RAVER2	Q9HCJ3	691 aa	Known RBP	13.59	□□□□□ -0.23
SF3B2-208	ENST00000529994	YBX2	Q9Y2T7	364 aa	Known RBP	13.59	□□□□□ -0.23
SF3B2-208	ENST00000529994	TLR3	O15455	904 aa	Known RBP	13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	RABGGTB	P53611	331 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	GJA9	P57773	515 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	CTR9	Q6PD62	1173 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	OTOP2	Q7RTS6	562 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	ANKRD35	Q8N283	1001 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	DDRGK1	Q96HY6	314 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	FGD4	Q96M96	766 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	SLC28A3	Q9HAS3	691 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	IL23A	Q9NPF7	189 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	PAG1	Q9NWQ8	432 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	SLC4A4	Q9Y6R1	1079 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	GREB1L	Q9C091	1923 aa	Predicted RBP	13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994	UMODL1	Q5DID0	1318 aa		13.58	□□□□□ -0.24
SF3B2-208	ENST00000529994		F5H6K3	240 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	HMMR	O75330	724 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	NDUFB10	O96000	172 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	FGB	P02675	491 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	PTGS1	P23219	599 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	PLA2G5	P39877	138 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	CCL23	P55773	120 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	KLRC3	Q07444	240 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	RAB30	Q15771	203 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	HSP90AB4P	Q58FF6	505 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	NOL8	Q76FK4	1167 aa	Known RBP	13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	ARMCX2	Q7L311	632 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	CCDC144CP	Q8IYA2	1237 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	PRPF38A	Q8NAV1	312 aa	Known RBP	13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	HERVK_113	Q902F9	699 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	KIFC2	Q96AC6	838 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	UPF3A	Q9H1J1	476 aa	Known RBP	13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	ABHD16B	Q9H3Z7	469 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	HOMER2	Q9NSB8	354 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	ZBTB40	Q9NUA8	1239 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	XIRP2	A4UGR9	3374 aa		13.57	□□□□□ -0.24
SF3B2-208	ENST00000529994	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	CTAGE5	O15320	804 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	ZBED4	O75132	1171 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	CD4	P01730	458 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	MYOG	P15173	224 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	CNTN2	Q02246	1040 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	TFF2	Q03403	129 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	CXCL17	Q6UXB2	119 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	FAM122A	Q96E09	287 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	KIF1BP	Q96EK5	621 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.56	□□□□□ -0.24	4e-33	■□□□□ 8.5
SF3B2-208	ENST00000529994	HIPK3	Q9H422	1215 aa		13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	CHMP4B	Q9H444	224 aa	Known RBP	13.56	□□□□□ -0.24
SF3B2-208	ENST00000529994	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	SIRT2	Q8IXJ6	389 aa		13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	PUS7L	Q9H0K6	701 aa	Known RBP	13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	TRPV6	Q9H1D0	765 aa		13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	MTIF3	Q9H2K0	278 aa	Known RBP	13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	CLIP2	Q9UDT6	1046 aa		13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	DDX49	Q9Y6V7	483 aa	Known RBP	13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	ASTN1	O14525	1302 aa		13.55	□□□□□ -0.24
SF3B2-208	ENST00000529994	ZBBX	A8MT70	800 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	RASA1	P20936	1047 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	KCNQ1	P51787	676 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	TNFAIP2	Q03169	654 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	SKIV2L	Q15477	1246 aa	Known RBP	13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	PPP2R2D	Q66LE6	453 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	CHMP4C	Q96CF2	233 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	KATNBL1	Q9H079	304 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	MKNK2	Q9HBH9	465 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	SLC38A10	Q9HBR0	1119 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	NYAP2	Q9P242	653 aa		13.54	□□□□□ -0.24
SF3B2-208	ENST00000529994	TRANK1	O15050	2925 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	MINDY4B	A8MYZ0	360 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	RFXAP	O00287	272 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	ATP2A1	O14983	1001 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	BMP1	P13497	986 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	ATP5J	P18859	108 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	PSMC6	P62333	389 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	ITGA7	Q13683	1181 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	UBE3C	Q15386	1083 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	TLK2	Q86UE8	772 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	CHST13	Q8NET6	341 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	SCLY	Q96I15	445 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	HAUS7	Q99871	368 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	NOC4L	Q9BVI4	516 aa	Known RBP	13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	WNT8A	Q9H1J5	351 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	CERS4	Q9HA82	394 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	FBXO40	Q9UH90	709 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	ISY1	Q9ULR0	285 aa	Known RBP	13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	SLC4A7	Q9Y6M7	1214 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	GRIN2D	O15399	1336 aa		13.53	□□□□□ -0.24
SF3B2-208	ENST00000529994	SCN5A	Q14524	2016 aa		13.52	□□□□□ -0.24
SF3B2-208	ENST00000529994	B4GALT4	O60513	344 aa		13.52	□□□□□ -0.25
SF3B2-208	ENST00000529994	PRDM1	O75626	825 aa		13.52	□□□□□ -0.25
SF3B2-208	ENST00000529994	FSCN1	Q16658	493 aa	Known RBP	13.52	□□□□□ -0.25
SF3B2-208	ENST00000529994	TMEM63B	Q5T3F8	832 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms