RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ADCY3O60266 1144 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 MARCH6O60337 910 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 ITGB5P18084 799 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 CD247P20963 164 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 RNF4P78317 190 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 RASGRF1Q13972 1273 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 AOC3Q16853 763 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 TAF7LQ5H9L4 462 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 FAM209AQ5JX71 171 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 TMPRSS7Q7RTY8 843 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 C7orf61Q8IZ16 206 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 BTN2A2Q8WVV5 523 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 EXOC2Q96KP1 924 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.6□□□□□ -1.67
CD44-229ENST00000528672 TRIT1Q9H3H1 467 aaKnown RBP4.6□□□□□ -1.67
CD44-229ENST00000528672 TMX1Q9H3N1 280 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 METTL14Q9HCE5 456 aaKnown RBP4.6□□□□□ -1.67
CD44-229ENST00000528672 ATP13A1Q9HD20 1204 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 ARHGEF4Q9NR80 690 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 ZSWIM5Q9P217 1185 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 EBF1Q9UH73 591 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 KCNH3Q9ULD8 1083 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 ST14Q9Y5Y6 855 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 KDM2BQ8NHM5 1336 aa4.6□□□□□ -1.67
CD44-229ENST00000528672 BIN1O00499 593 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 FKTNO75072 461 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 EFEMP2O95967 443 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 IFNGR1P15260 489 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 CEBPAP49715 358 aaPredicted RBP4.59□□□□□ -1.67
CD44-229ENST00000528672 KIR3DS1Q14943 382 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 MTERF2Q49AM1 385 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 HEATR6Q6AI08 1181 aaKnown RBP4.59□□□□□ -1.67
CD44-229ENST00000528672 DENND5AQ6IQ26 1287 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 SPRED2Q7Z698 418 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 ADAT2Q7Z6V5 191 aaKnown RBP4.59□□□□□ -1.67
CD44-229ENST00000528672 ATG4DQ86TL0 474 aaPredicted RBP4.59□□□□□ -1.67
CD44-229ENST00000528672 LRRN4CLQ8ND94 238 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 UBE2FQ969M7 185 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 GPR62Q9BZJ7 368 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 PCDH12Q9NPG4 1184 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 GPRC5CQ9NQ84 441 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 SEMA3GQ9NS98 782 aa4.59□□□□□ -1.67
CD44-229ENST00000528672 GPR55Q9Y2T6 319 aaPredicted RBP4.59□□□□□ -1.67
CD44-229ENST00000528672 KCNH1O95259 989 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 C8AP07357 584 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 CD8BP10966 210 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 SRFP11831 508 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 GALK1P51570 392 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 GYS2P54840 703 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 PPP2R2AP63151 447 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 SSRP1Q08945 709 aaKnown RBP4.58□□□□□ -1.68
CD44-229ENST00000528672 PLCL1Q15111 1095 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 NOL8Q76FK4 1167 aaKnown RBP4.58□□□□□ -1.68
CD44-229ENST00000528672 ZNF227Q86WZ6 799 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 FIBCD1Q8N539 461 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 POU5F2Q8N7G0 328 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 FLAD1Q8NFF5 587 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 ENOX1Q8TC92 643 aaKnown RBP4.58□□□□□ -1.68
CD44-229ENST00000528672 MRGPRX3Q96LB0 322 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 PHAXQ9H814 394 aaKnown RBP4.58□□□□□ -1.68
CD44-229ENST00000528672 CGGBP1Q9UFW8 167 aaPredicted RBP4.58□□□□□ -1.68
CD44-229ENST00000528672 TMEFF2Q9UIK5 374 aaPredicted RBP4.58□□□□□ -1.68
CD44-229ENST00000528672 SUGT1Q9Y2Z0 365 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 PTCH2Q9Y6C5 1203 aa4.58□□□□□ -1.68
CD44-229ENST00000528672 STXBP3O00186 592 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 CAPNS1P04632 268 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 NMIQ13287 307 aaPredicted RBP4.57□□□□□ -1.68
CD44-229ENST00000528672 GAB4Q2WGN9 574 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 ZNF792Q3KQV3 632 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 C16orf86Q6ZW13 317 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 USHBP1Q8N6Y0 703 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 THAP3Q8WTV1 239 aaPredicted RBP4.57□□□□□ -1.68
CD44-229ENST00000528672 TCTN2Q96GX1 697 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 CLUHP3Q96NS8 147 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 HDAC8Q9BY41 377 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 CHMP4AQ9BY43 222 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 FOXP3Q9BZS1 431 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 GPATCH2Q9NW75 528 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 TMEM260Q9NX78 707 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 PRR13Q9NZ81 148 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 PCDHA11Q9Y5I1 949 aa4.57□□□□□ -1.68
CD44-229ENST00000528672 ASXL2Q76L83 1435 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 ESR1P03372 595 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 IKZF1Q13422 519 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 NTRK3Q16288 839 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 C2orf27AQ580R0 203 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 MBLAC2Q68D91 279 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 KIAA0907Q7Z7F0 614 aaPredicted RBP4.56□□□□□ -1.68
CD44-229ENST00000528672 ASIC4Q96FT7 647 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 FEZ1Q99689 392 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 SPATA9Q9BWV2 254 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 FAM126AQ9BYI3 521 aaPredicted RBP4.56□□□□□ -1.68
CD44-229ENST00000528672 CHST7Q9NS84 486 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 AKT3Q9Y243 479 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 PCDHB12Q9Y5F1 795 aa4.56□□□□□ -1.68
CD44-229ENST00000528672 ANKRD34BA5PLL1 514 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 PRODHO43272 600 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 CD3EP07766 207 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 LCP1P13796 627 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 TPP2P29144 1249 aaPredicted RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms