RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 IRX6P78412 446 aaPredicted RBP11.29□□□□□ -0.6
CHD7-208ENST00000528280 MAMDC4Q6UXC1 1216 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 BTNL9Q6UXG8 535 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 TMEM47Q9BQJ4 181 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 ACAD9Q9H845 621 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 RIPK3Q9Y572 518 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 RAD50Q92878 1312 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 SYNGAP1Q96PV0 1343 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 MYH4Q9Y623 1939 aa11.29□□□□□ -0.6
CHD7-208ENST00000528280 ZNF236Q9UL36 1845 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 DNAJC25-GNG10A0A024R161 153 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 KBTBD13C9JR72 458 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 NMT2O60551 498 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 PGK2P07205 417 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 RARBP10826 455 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 COL6A1P12109 1028 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 PDE4AP27815 886 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 TRDNQ13061 729 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 CCDC96Q2M329 555 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 GPATCH4Q5T3I0 446 aaKnown RBP11.28□□□□□ -0.6
CHD7-208ENST00000528280 KCTD1Q719H9 257 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 ANKS1AQ92625 1134 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 MAF1Q9H063 256 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 FAM184BQ9ULE4 1060 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 PRR12Q9ULL5 1215 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 U3KPZ7 1027 aaPredicted RBP11.28□□□□□ -0.6
CHD7-208ENST00000528280 A0A0G2JMZ2 1700 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 PFASO15067 1338 aa11.28□□□□□ -0.6
CHD7-208ENST00000528280 ZNFX1Q9P2E3 1918 aaKnown RBP11.27□□□□□ -0.6
CHD7-208ENST00000528280 ASB14A6NK59 587 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 AKR1A1P14550 325 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 CHMLP26374 656 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 PRAMEF19Q5SWL8 479 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 RNF180Q86T96 592 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 TRPV1Q8NER1 839 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 DIS3LQ8TF46 1054 aaKnown RBP11.27□□□□□ -0.61
CHD7-208ENST00000528280 TRERF1Q96PN7 1200 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 SENP6Q9GZR1 1112 aaPredicted RBP11.27□□□□□ -0.61
CHD7-208ENST00000528280 ABHD16BQ9H3Z7 469 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 KAT14Q9H8E8 782 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 ZSWIM5Q9P217 1185 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 TACC3Q9Y6A5 838 aa11.27□□□□□ -0.61
CHD7-208ENST00000528280 EYSQ5T1H1 3165 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 PARP14Q460N5 1801 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 TTC28Q96AY4 2481 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 LOC102724159A0A0B4J2E5 919 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 POTEB2H3BUK9 544 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 KDM4AO75164 1064 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 ICAM1P05362 532 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 ALAS1P13196 640 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 PWP2Q15269 919 aaKnown RBP11.26□□□□□ -0.61
CHD7-208ENST00000528280 SYDE2Q5VT97 1194 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 KIAA1211Q6ZU35 1233 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 CENPQQ7L2Z9 268 aaPredicted RBP11.26□□□□□ -0.61
CHD7-208ENST00000528280 TBC1D10CQ8IV04 446 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 AGBL1Q96MI9 1066 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 ZSCAN10Q96SZ4 725 aaPredicted RBP11.26□□□□□ -0.61
CHD7-208ENST00000528280 MPHOSPH6Q99547 160 aaKnown RBP11.26□□□□□ -0.61
CHD7-208ENST00000528280 UBAC1Q9BSL1 405 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 SPC25Q9HBM1 224 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 RNF146Q9NTX7 359 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 CCPG1Q9ULG6 757 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 MTMR7Q9Y216 660 aa11.26□□□□□ -0.61
CHD7-208ENST00000528280 PRUNE2Q8WUY3 3088 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 B4DLN1 442 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 SNHG28P0DPA3 235 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 PDHBP11177 359 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 GSPT1P15170 499 aaKnown RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 MRPL12P52815 198 aaKnown RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 ZNF543Q08ER8 600 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 ACVR2BQ13705 512 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 FAM109BQ6ICB4 259 aaPredicted RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 CCDC174Q6PII3 467 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 TDHQ8IZJ6 230 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 TSEN34Q9BSV6 310 aaKnown RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 RANBP17Q9H2T7 1088 aaKnown RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 GPCPD1Q9NPB8 672 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 XPNPEP3Q9NQH7 507 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 HOMER2Q9NSB8 354 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 ADD3Q9UEY8 706 aaKnown RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 ZNF536O15090 1300 aa11.25□□□□□ -0.61
CHD7-208ENST00000528280 COL11A1P12107 1806 aaPredicted RBP11.25□□□□□ -0.61
CHD7-208ENST00000528280 ERICH2A1L162 156 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 B4E1Z4 1266 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 DUSP11O75319 330 aaKnown RBP11.24□□□□□ -0.61
CHD7-208ENST00000528280 SNAI1O95863 264 aaPredicted RBP11.24□□□□□ -0.61
CHD7-208ENST00000528280 ZNF865P0CJ78 1059 aaPredicted RBP11.24□□□□□ -0.61
CHD7-208ENST00000528280 TRAF1Q13077 416 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 SART3Q15020 963 aaKnown RBP11.24□□□□□ -0.61
CHD7-208ENST00000528280 LRRC41Q15345 812 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 ASPRV1Q53RT3 343 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 GJC2Q5T442 439 aaPredicted RBP11.24□□□□□ -0.61
CHD7-208ENST00000528280 C7orf61Q8IZ16 206 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 FAM133AQ8N9E0 248 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 PNMA1Q8ND90 353 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 RGS22Q8NE09 1264 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 CHMP4CQ96CF2 233 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 GUCD1Q96NT3 240 aa11.24□□□□□ -0.61
CHD7-208ENST00000528280 A1CFQ9NQ94 594 aaKnown RBP11.24□□□□□ -0.61
CHD7-208ENST00000528280 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms