RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 RNF187Q5TA31 235 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 SEPT14Q6ZU15 432 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ARMC9Q7Z3E5 817 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 FAM228AQ86W67 206 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 IQCF2Q8IXL9 164 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 TRIM22Q8IYM9 498 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 MYOCDQ8IZQ8 938 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 FAM177A1Q8N128 213 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 TMEM151AQ8N4L1 468 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 TCP11L2Q8N4U5 519 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 SMYD1Q8NB12 490 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 NSMCE1Q8WV22 266 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 FAM81BQ96LP2 452 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ZSCAN31Q96LW9 406 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 GAS2L1Q99501 681 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 SH3GL2Q99962 352 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 DCTPP1Q9H773 170 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 TMEM165Q9HC07 324 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ARHGEF10LQ9HCE6 1279 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 NOP53Q9NZM5 478 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 ANKIB1Q9P2G1 1089 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 TFIP11Q9UBB9 837 aaKnown RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 BARX2Q9UMQ3 279 aaPredicted RBP6.5□□□□□ -1.37
CD44-225ENST00000527326 MTMR6Q9Y217 621 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 USTQ9Y2C2 406 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 ZNF510Q9Y2H8 683 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 PPP2R2CQ9Y2T4 447 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 RIPOR2Q9Y4F9 1068 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 SH3TC1Q8TE82 1336 aa6.5□□□□□ -1.37
CD44-225ENST00000527326 SETD1BQ9UPS6 1966 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 KDM5AP29375 1690 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 ARHGEF5Q12774 1597 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 NSD2O96028 1365 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 TARSL2A2RTX5 802 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 CTAGE15A4D2H0 777 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 DNAJC8O75937 253 aaPredicted RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 GDF11O95390 407 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 LINGO3P0C6S8 592 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 CTAGE8P0CG41 777 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 GHRP10912 638 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 EPB41P11171 864 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 VDRP11473 427 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 ATP4AP20648 1035 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 PSMC4P43686 418 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 GSK3AP49840 483 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 MARSP56192 900 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 VSNL1P62760 191 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 RASSF7Q02833 373 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 SRSF11Q05519 484 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 MPP3Q13368 585 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 GAS6Q14393 721 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 E2F5Q15329 346 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 LACTB2Q53H82 288 aaPredicted RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 C11orf57Q6ZUT1 292 aaPredicted RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 TTC6Q86TZ1 520 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 CTAGE6Q86UF2 777 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 SESTD1Q86VW0 696 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 CCAR1Q8IX12 1150 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 DHX40Q8IX18 779 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 CTAGE4Q8IX94 777 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 CCDC148Q8NFR7 591 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 COG1Q8WTW3 980 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 RUBCNQ92622 972 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 BHMTQ93088 406 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 DHX58Q96C10 678 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 PNKPQ96T60 521 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 ESYT1Q9BSJ8 1104 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 MTA3Q9BTC8 594 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 PHACTR1Q9C0D0 580 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 GRIP2Q9C0E4 1043 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 OSBPL3Q9H4L5 887 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 SH2B1Q9NRF2 756 aaPredicted RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 ATXN10Q9UBB4 475 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 MYO1AQ9UBC5 1043 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 CIDEBQ9UHD4 219 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.49□□□□□ -1.37
CD44-225ENST00000527326 LIMCH1Q9UPQ0 1083 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 THRAP3Q9Y2W1 955 aaKnown RBP6.49□□□□□ -1.37
CD44-225ENST00000527326 DYRK1BQ9Y463 629 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 IQGAP1P46940 1657 aa6.49□□□□□ -1.37
CD44-225ENST00000527326 TMEM221A6NGB7 291 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 TMEM232C9JQI7 657 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 RNF225M0QZC1 329 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 GPR25O00155 361 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 FANCGO15287 622 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 HMMRO75330 724 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 ZNF189O75820 626 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 ARHGEF15O94989 841 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 ATP6V1G2O95670 118 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 IDO1P14902 403 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 CYP11B2P19099 503 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 KIF5BP33176 963 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 TRPC1P48995 793 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 CTCFP49711 727 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 NLRP5P59047 1200 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 APBA1Q02410 837 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 KCNA1Q09470 495 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 MYO1EQ12965 1108 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 CUL4BQ13620 913 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 LBRQ14739 615 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms