RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NHSQ6T4R5 1651 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 COBLO75128 1261 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 RHOBTB3O94955 611 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 ATP2B4P23634 1241 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 GNA11P29992 359 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 CDK8P49336 464 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 RSRC2Q7L4I2 434 aaKnown RBP23.9■■□□□ 1.42
VPS28-205ENST00000526204 SLF2Q8IX21 1173 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 NEDD1Q8NHV4 660 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 NUP88Q99567 741 aaPredicted RBP23.9■■□□□ 1.42
VPS28-205ENST00000526204 CD209Q9NNX6 404 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 FHOD1Q9Y613 1164 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 ATP8B1O43520 1251 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 PARP1P09874 1014 aaKnown RBP23.9■■□□□ 1.42
VPS28-205ENST00000526204 EEF1GP26641 437 aaKnown RBP23.9■■□□□ 1.42
VPS28-205ENST00000526204 RABGGTAQ92696 567 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 THAP9Q9H5L6 903 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 C6orf50Q9HD87 102 aa23.9■■□□□ 1.42
VPS28-205ENST00000526204 PSMA7O14818 248 aa23.89■■□□□ 1.42
VPS28-205ENST00000526204 ZRANB2O95218 330 aaKnown RBP eCLIP23.89■■□□□ 1.422e-7■■□□□ 13.6
VPS28-205ENST00000526204 NAPAP54920 295 aa23.89■■□□□ 1.42
VPS28-205ENST00000526204 KIF20AO95235 890 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 IL1R1P14778 569 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 GPSM2P81274 684 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 UBXN1Q04323 297 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 NONOQ15233 471 aaKnown RBP eCLIP23.89■■□□□ 1.41
VPS28-205ENST00000526204 TEX11Q8IYF3 940 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 CERKQ8TCT0 537 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 NOC3LQ8WTT2 800 aaKnown RBP23.89■■□□□ 1.41
VPS28-205ENST00000526204 GOLGA1Q92805 767 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 RRP36Q96EU6 259 aaKnown RBP23.89■■□□□ 1.41
VPS28-205ENST00000526204 FAM163AQ96GL9 167 aaPredicted RBP23.89■■□□□ 1.41
VPS28-205ENST00000526204 MAPK8IP1Q9UQF2 711 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 MTMR7Q9Y216 660 aa23.89■■□□□ 1.41
VPS28-205ENST00000526204 ADRA2BP18089 450 aa23.88■■□□□ 1.41
VPS28-205ENST00000526204 GIMAP8Q8ND71 665 aaPredicted RBP23.88■■□□□ 1.41
VPS28-205ENST00000526204 CCDC47Q96A33 483 aaKnown RBP23.88■■□□□ 1.41
VPS28-205ENST00000526204 A0A1W2PQC6 194 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 PP2D1A8MPX8 630 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 KLRC4O43908 158 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 UFL1O94874 794 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 OR52Z1P0C646 297 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 PNMA6AP0CW24 399 aaPredicted RBP23.87■■□□□ 1.41
VPS28-205ENST00000526204 TUBB4BP68371 445 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 ORC2Q13416 577 aaPredicted RBP23.87■■□□□ 1.41
VPS28-205ENST00000526204 CREBRFQ8IUR6 639 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 IRX2Q9BZI1 471 aaPredicted RBP23.87■■□□□ 1.41
VPS28-205ENST00000526204 MYO1AQ9UBC5 1043 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 SEC63Q9UGP8 760 aaKnown RBP23.87■■□□□ 1.41
VPS28-205ENST00000526204 SBF2Q86WG5 1849 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 NAV1Q8NEY1 1877 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 GOLGA8HP0CJ92 632 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 KRT9P35527 623 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 CRY2Q49AN0 593 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 SOGA3Q5TF21 947 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 IRF2BP1Q8IU81 584 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 DHTKD1Q96HY7 919 aaPredicted RBP23.87■■□□□ 1.41
VPS28-205ENST00000526204 GGA1Q9UJY5 639 aa23.87■■□□□ 1.41
VPS28-205ENST00000526204 SMCO2A6NFE2 343 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 LGALS16A8MUM7 142 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 PPP1R2P41236 205 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 FAM193AP78312 1265 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 JAKMIP3Q5VZ66 844 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 PRR5LQ6MZQ0 368 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 FAM196AQ6ZSG2 479 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 CABP7Q86V35 215 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 MAGEC2Q9UBF1 373 aaPredicted RBP23.86■■□□□ 1.41
VPS28-205ENST00000526204 SNED1Q8TER0 1413 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 FLT1P17948 1338 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 ERVK-24P63145 666 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 TEX35Q5T0J7 233 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 MB21D1Q8N884 522 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 CEP112Q8N8E3 955 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 TBC1D22AQ8WUA7 517 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 GPR101Q96P66 508 aaPredicted RBP23.86■■□□□ 1.41
VPS28-205ENST00000526204 CDC23Q9UJX2 597 aa23.86■■□□□ 1.41
VPS28-205ENST00000526204 CTAGE9A4FU28 777 aa23.85■■□□□ 1.41
VPS28-205ENST00000526204 CCNT1O60563 726 aaKnown RBP23.85■■□□□ 1.41
VPS28-205ENST00000526204 ZNF569Q5MCW4 686 aa23.85■■□□□ 1.41
VPS28-205ENST00000526204 NEK8Q86SG6 692 aa23.85■■□□□ 1.41
VPS28-205ENST00000526204 SLC51AQ86UW1 340 aa23.85■■□□□ 1.41
VPS28-205ENST00000526204 RBM17Q96I25 401 aaKnown RBP23.85■■□□□ 1.41
VPS28-205ENST00000526204 hCG_1984214I3L0E3 225 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 NOVP48745 357 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 LETM2Q2VYF4 491 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 SRGAP1Q7Z6B7 1085 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 ZNF713Q8N859 430 aaPredicted RBP23.84■■□□□ 1.41
VPS28-205ENST00000526204 TRIM47Q96LD4 638 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 ESYT2A0FGR8 921 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 TRIM49BA6NDI0 452 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 AMPD3Q01432 767 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 TERF2Q15554 542 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 OR8K1Q8NGG5 319 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 USP21Q9UK80 565 aa23.84■■□□□ 1.41
VPS28-205ENST00000526204 BICDL2A1A5D9 508 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 BBOX1O75936 387 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 PLCG1P19174 1290 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 RHBDL3P58872 404 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 ST5P78524 1137 aa23.83■■□□□ 1.41
VPS28-205ENST00000526204 TXNRD1Q16881 649 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms