RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SIRT2Q8IXJ6 389 aa6.6□□□□□ -1.35
CD44-217ENST00000525348 INTS4Q96HW7 963 aaKnown RBP6.6□□□□□ -1.35
CD44-217ENST00000525348 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.6□□□□□ -1.35
CD44-217ENST00000525348 CWC22Q9HCG8 908 aaKnown RBP6.6□□□□□ -1.35
CD44-217ENST00000525348 TNFRSF10DQ9UBN6 386 aa6.6□□□□□ -1.35
CD44-217ENST00000525348 APEX2Q9UBZ4 518 aa6.6□□□□□ -1.35
CD44-217ENST00000525348 CD3EP07766 207 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 RTP1P59025 263 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 ARID5AQ03989 594 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 CWF19L1Q69YN2 538 aaKnown RBP6.59□□□□□ -1.35
CD44-217ENST00000525348 VPS37DQ86XT2 251 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 MICAL1Q8TDZ2 1067 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 ZNF408Q9H9D4 720 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 CGGBP1Q9UFW8 167 aaPredicted RBP6.59□□□□□ -1.35
CD44-217ENST00000525348 PRKAG3Q9UGI9 489 aa6.59□□□□□ -1.35
CD44-217ENST00000525348 FGF10O15520 208 aaPredicted RBP6.58□□□□□ -1.36
CD44-217ENST00000525348 VAMP4O75379 141 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 KRT1P04264 644 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 DNAJA1P31689 397 aaKnown RBP6.58□□□□□ -1.36
CD44-217ENST00000525348 GNL2Q13823 731 aaKnown RBP6.58□□□□□ -1.36
CD44-217ENST00000525348 SNX17Q15036 470 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 SLC14A2Q15849 920 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 LCE3BQ5TA77 95 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 C6orf15Q6UXA7 325 aaPredicted RBP6.58□□□□□ -1.36
CD44-217ENST00000525348 SLC43A3Q8NBI5 491 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 FAM84AQ96KN4 292 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 JMJD8Q96S16 334 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 LGR4Q9BXB1 951 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 GBP3Q9H0R5 595 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 EPB41L4BQ9H329 900 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 ACTR10Q9NZ32 417 aa6.58□□□□□ -1.36
CD44-217ENST00000525348 DIS3Q9Y2L1 958 aaKnown RBP6.58□□□□□ -1.36
CD44-217ENST00000525348 SF3B6Q9Y3B4 125 aaKnown RBP6.58□□□□□ -1.36
CD44-217ENST00000525348 SDHBP21912 280 aa6.57□□□□□ -1.36
CD44-217ENST00000525348 ADAT2Q7Z6V5 191 aaKnown RBP6.57□□□□□ -1.36
CD44-217ENST00000525348 IRF2BP1Q8IU81 584 aa6.57□□□□□ -1.36
CD44-217ENST00000525348 KRTAP1-3Q8IUG1 177 aa6.57□□□□□ -1.36
CD44-217ENST00000525348 ARHGEF39Q8N4T4 335 aa6.57□□□□□ -1.36
CD44-217ENST00000525348 GMLQ99445 158 aa6.57□□□□□ -1.36
CD44-217ENST00000525348 SLC6A17Q9H1V8 727 aa6.57□□□□□ -1.36
CD44-217ENST00000525348 DCP1AQ9NPI6 582 aaPredicted RBP6.57□□□□□ -1.36
CD44-217ENST00000525348 MYOCOSA0A1B0GUC4 107 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 ANKRD34BA5PLL1 514 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 STXBP3O00186 592 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 MSL3P1P0C860 447 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 ENDOUP21128 410 aaKnown RBP6.56□□□□□ -1.36
CD44-217ENST00000525348 DPY19L1Q2PZI1 675 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 TNNI3KQ59H18 835 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 LARP1BQ659C4 914 aaKnown RBP6.56□□□□□ -1.36
CD44-217ENST00000525348 MRM1Q6IN84 353 aaKnown RBP6.56□□□□□ -1.36
CD44-217ENST00000525348 SYDE1Q6ZW31 735 aaPredicted RBP6.56□□□□□ -1.36
CD44-217ENST00000525348 KSR1Q8IVT5 923 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 FBXO15Q8NCQ5 510 aaPredicted RBP6.56□□□□□ -1.36
CD44-217ENST00000525348 RCC1LQ96I51 464 aaKnown RBP6.56□□□□□ -1.36
CD44-217ENST00000525348 IMPACTQ9P2X3 320 aa6.56□□□□□ -1.36
CD44-217ENST00000525348 A0A1W2PQ45 241 aaPredicted RBP6.55□□□□□ -1.36
CD44-217ENST00000525348 A0A1W2PQY0 241 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 AURKAO14965 403 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 PPM1BO75688 479 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 POU4F1Q01851 419 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 GALNT18Q6P9A2 607 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 ZNF605Q86T29 641 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 CILP2Q8IUL8 1156 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 FAM178BQ8IXR5 827 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 HNRNPLLQ8WVV9 542 aaKnown RBP6.55□□□□□ -1.36
CD44-217ENST00000525348 PTCHD1Q96NR3 888 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 CRTAC1Q9NQ79 661 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 TAF6LQ9Y6J9 622 aa6.55□□□□□ -1.36
CD44-217ENST00000525348 WTIPA6NIX2 430 aaPredicted RBP6.54□□□□□ -1.36
CD44-217ENST00000525348 PNLIPP16233 465 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 PRKCAP17252 672 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 PDE6BP35913 854 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 NOP2P46087 812 aaKnown RBP6.54□□□□□ -1.36
CD44-217ENST00000525348 MVKQ03426 396 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 NCAPHQ15003 741 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 ADGRF1Q5T601 910 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 RCSD1Q6JBY9 416 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 CELF2-AS1Q8N7Q2 184 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 NAT16Q8N8M0 369 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 MCOLN1Q9GZU1 580 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 ZNF552Q9H707 407 aaPredicted RBP6.54□□□□□ -1.36
CD44-217ENST00000525348 ACSL6Q9UKU0 697 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 AKT3Q9Y243 479 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 SUGT1Q9Y2Z0 365 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 EMC9Q9Y3B6 208 aa6.54□□□□□ -1.36
CD44-217ENST00000525348 TBX1O43435 398 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 C1QTNF9P0C862 333 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 YBX3P16989 372 aaKnown RBP eCLIP6.53□□□□□ -1.36
CD44-217ENST00000525348 ERVFRD-1P60508 538 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 CYP4F3Q08477 520 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 GRB10Q13322 594 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 NUP43Q8NFH3 380 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 MRGPRX3Q96LB0 322 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 APBA2Q99767 749 aa6.53□□□□□ -1.36
CD44-217ENST00000525348 ETV2O00321 342 aaPredicted RBP6.52□□□□□ -1.37
CD44-217ENST00000525348 KCNH1O95259 989 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 GJB6O95452 261 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 TSPAN15O95858 294 aa6.52□□□□□ -1.37
CD44-217ENST00000525348 ZNF143P52747 638 aaPredicted RBP6.52□□□□□ -1.37
CD44-217ENST00000525348 JAG1P78504 1218 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms