RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 LGR4Q9BXB1 951 aa8.43□□□□□ -1.06
SKP1-213ENST00000524288 SUCOQ9UBS9 1254 aaKnown RBP8.43□□□□□ -1.06
SKP1-213ENST00000524288 WASH4PA8MWX3 477 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 CLEC3AO75596 197 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 HMGB1P09429 215 aaKnown RBP8.42□□□□□ -1.06
SKP1-213ENST00000524288 HK2P52789 917 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 PMS1P54277 932 aaKnown RBP8.42□□□□□ -1.06
SKP1-213ENST00000524288 SV2CQ496J9 727 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 DCAF15Q66K64 600 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 PRR23BQ6ZRT6 265 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 HOMER1Q86YM7 354 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 LILRA2Q8N149 483 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 OXR1Q8N573 874 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 FBXO15Q8NCQ5 510 aaPredicted RBP8.42□□□□□ -1.06
SKP1-213ENST00000524288 ENOX1Q8TC92 643 aaKnown RBP8.42□□□□□ -1.06
SKP1-213ENST00000524288 PPP1R14AQ96A00 147 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 FGD4Q96M96 766 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 ADAMTS10Q9H324 1103 aa8.42□□□□□ -1.06
SKP1-213ENST00000524288 FAM153BP0C7A2 387 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 RAP1GAPP47736 663 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 NR0B2Q15466 257 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 C21orf62-AS1Q17RA5 79 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 KRTAP19-4Q3LI73 84 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 TKFCQ3LXA3 575 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 AXDND1Q5T1B0 1012 aaPredicted RBP8.41□□□□□ -1.06
SKP1-213ENST00000524288 THAP3Q8WTV1 239 aaPredicted RBP8.41□□□□□ -1.06
SKP1-213ENST00000524288 VWCEQ96DN2 955 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 GPATCH3Q96I76 525 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 MKRN2Q9H000 416 aaKnown RBP8.41□□□□□ -1.06
SKP1-213ENST00000524288 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.41□□□□□ -1.06
SKP1-213ENST00000524288 TMEM260Q9NX78 707 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 PCDHA11Q9Y5I1 949 aa8.41□□□□□ -1.06
SKP1-213ENST00000524288 FITM1A5D6W6 292 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 LRRN2O75325 713 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 EPHX1P07099 455 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 ZGLP1P0C6A0 271 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 PLEKHG4Q58EX7 1191 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 CCDC144CPQ8IYA2 1237 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 DHRS1Q96LJ7 313 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 HAUS7Q99871 368 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 SPATA9Q9BWV2 254 aa8.4□□□□□ -1.06
SKP1-213ENST00000524288 ASCC2Q9H1I8 757 aaPredicted RBP8.4□□□□□ -1.06
SKP1-213ENST00000524288 ASMTLO95671 621 aa8.39□□□□□ -1.07
SKP1-213ENST00000524288 CCNFP41002 786 aa8.39□□□□□ -1.07
SKP1-213ENST00000524288 CHRNEQ04844 493 aa8.39□□□□□ -1.07
SKP1-213ENST00000524288 BBS9Q3SYG4 887 aa8.39□□□□□ -1.07
SKP1-213ENST00000524288 HEATR6Q6AI08 1181 aaKnown RBP8.39□□□□□ -1.07
SKP1-213ENST00000524288 SYDE1Q6ZW31 735 aaPredicted RBP8.39□□□□□ -1.07
SKP1-213ENST00000524288 FILIP1Q7Z7B0 1213 aa8.39□□□□□ -1.07
SKP1-213ENST00000524288 NSUN3Q9H649 340 aaKnown RBP8.39□□□□□ -1.07
SKP1-213ENST00000524288 APEX2Q9UBZ4 518 aa8.39□□□□□ -1.07
SKP1-213ENST00000524288 CBFA2T2O43439 604 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 ERVFC1P60507 584 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 DUSP4Q13115 394 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 CLEC16AQ2KHT3 1053 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 SPPL2CQ8IUH8 684 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 SYTL5Q8TDW5 730 aaPredicted RBP8.38□□□□□ -1.07
SKP1-213ENST00000524288 TOX2Q96NM4 488 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 EPB41L4BQ9H329 900 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 CWC22Q9HCG8 908 aaKnown RBP8.38□□□□□ -1.07
SKP1-213ENST00000524288 LRP2BPQ9P2M1 347 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 SUSD2Q9UGT4 822 aa8.38□□□□□ -1.07
SKP1-213ENST00000524288 PPP1R12AO14974 1030 aaPredicted RBP8.37□□□□□ -1.07
SKP1-213ENST00000524288 ADCY3O60266 1144 aa8.37□□□□□ -1.07
SKP1-213ENST00000524288 ADAT2Q7Z6V5 191 aaKnown RBP8.37□□□□□ -1.07
SKP1-213ENST00000524288 ADCY4Q8NFM4 1077 aa8.37□□□□□ -1.07
SKP1-213ENST00000524288 DIRC2Q96SL1 478 aa8.37□□□□□ -1.07
SKP1-213ENST00000524288 SLKQ9H2G2 1235 aaPredicted RBP8.37□□□□□ -1.07
SKP1-213ENST00000524288 SP110Q9HB58 689 aa8.37□□□□□ -1.07
SKP1-213ENST00000524288 DCP1AQ9NPI6 582 aaPredicted RBP8.37□□□□□ -1.07
SKP1-213ENST00000524288 SHISA3A0PJX4 238 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 ANKRD34BA5PLL1 514 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 L1CAMP32004 1257 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 GYS2P54840 703 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 TEKQ02763 1124 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 NMIQ13287 307 aaPredicted RBP8.36□□□□□ -1.07
SKP1-213ENST00000524288 SNX17Q15036 470 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 RNF187Q5TA31 235 aaPredicted RBP8.36□□□□□ -1.07
SKP1-213ENST00000524288 FOXB2Q5VYV0 432 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 RNF111Q6ZNA4 994 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 C16orf86Q6ZW13 317 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 ANKRD13AQ8IZ07 590 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 LRRC47Q8N1G4 583 aaKnown RBP8.36□□□□□ -1.07
SKP1-213ENST00000524288 ANKS4BQ8N8V4 417 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 JMYQ8N9B5 988 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 ZNF281Q9Y2X9 895 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 SUGT1Q9Y2Z0 365 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 ZNF451Q9Y4E5 1061 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 CD2APQ9Y5K6 639 aa8.36□□□□□ -1.07
SKP1-213ENST00000524288 A0A1W2PQU0 124 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 NFIBO00712 420 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 PTPROQ16827 1216 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 NBPF12Q5TAG4 269 aaPredicted RBP8.35□□□□□ -1.07
SKP1-213ENST00000524288 YOD1Q5VVQ6 348 aaPredicted RBP8.35□□□□□ -1.07
SKP1-213ENST00000524288 KIAA0907Q7Z7F0 614 aaPredicted RBP8.35□□□□□ -1.07
SKP1-213ENST00000524288 ANKLE2Q86XL3 938 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 IRF2BP1Q8IU81 584 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 CILP2Q8IUL8 1156 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 DAGLBQ8NCG7 672 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 ZSWIM2Q8NEG5 633 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms