RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 MGAMO43451 1857 aa9.02□□□□□ -0.96
LIMCH1-222ENST00000515847 DHX16O60231 1041 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 SLC25A27O95847 323 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 PDHBP11177 359 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 HOXB1P14653 301 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 CTGFP29279 349 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 LACTBP83111 547 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 RABEP1Q15276 862 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 POTEEQ6S8J3 1075 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 RUFY3Q7L099 469 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 CTU1Q7Z7A3 348 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 SGMS1Q86VZ5 419 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 FBXO22Q8NEZ5 403 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 GPRC5AQ8NFJ5 357 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 PAGR1Q9BTK6 254 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 TXNRD2Q9NNW7 524 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 FBXO28Q9NVF7 368 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 FBXO40Q9UH90 709 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 MTMR7Q9Y216 660 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 RABGAP1Q9Y3P9 1069 aa9.02□□□□□ -0.97
LIMCH1-222ENST00000515847 CENPFP49454 3210 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 COL11A1P12107 1806 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 GOLGA8BA8MQT2 603 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 STK25O00506 426 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 ZBTB43O43298 467 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 CNMDO75829 334 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 CDKL5O76039 1030 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 SNHG28P0DPA3 235 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 MAPK4P31152 587 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 MCM2P49736 904 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 RBM25P49756 843 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 PRMT2P55345 433 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 FCGRTP55899 365 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 ZNF543Q08ER8 600 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 SEC23AQ15436 765 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 TKFCQ3LXA3 575 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 CYB5R4Q7L1T6 521 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 OTOP1Q7RTM1 612 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 ZNF654Q8IZM8 581 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 NUP133Q8WUM0 1156 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 SOCS4Q8WXH5 440 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 ATG4CQ96DT6 458 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 IL17RAQ96F46 866 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 TEX13BQ9BXU2 312 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 MAF1Q9H063 256 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 EFCC1Q9HA90 598 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 LY9Q9HBG7 655 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 ZSWIM6Q9HCJ5 1215 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 PDRG1Q9NUG6 133 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 SLC5A4Q9NY91 659 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 RBPJLQ9UBG7 517 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 MORF4L1Q9UBU8 362 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 SEC63Q9UGP8 760 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 NAP1L2Q9ULW6 460 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 TRIM17Q9Y577 477 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 IVNS1ABPQ9Y6Y0 642 aa9.01□□□□□ -0.97
LIMCH1-222ENST00000515847 GOLGA8AA7E2F4 631 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 TMEM232C9JQI7 657 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 hCG_1984214I3L0E3 225 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 CPLX1O14810 134 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 FMNL1O95466 1100 aaPredicted RBP9□□□□□ -0.97
LIMCH1-222ENST00000515847 SMARCA1P28370 1054 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 PSMC4P43686 418 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 METAP2P50579 478 aaKnown RBP eCLIP9□□□□□ -0.97
LIMCH1-222ENST00000515847 ANTXR2P58335 489 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 ERVK-9P63128 1117 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 ERVK-24P63145 666 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 AKAP17AQ02040 695 aaKnown RBP9□□□□□ -0.97
LIMCH1-222ENST00000515847 MMRN1Q13201 1228 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 COL9A3Q14050 684 aaPredicted RBP9□□□□□ -0.97
LIMCH1-222ENST00000515847 GRM4Q14833 912 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 RTN1Q16799 776 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 SYDE2Q5VT97 1194 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 BTNL9Q6UXG8 535 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 MICU3Q86XE3 530 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 TEX2Q8IWB9 1127 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 ZNF713Q8N859 430 aaPredicted RBP9□□□□□ -0.97
LIMCH1-222ENST00000515847 SHCBP1Q8NEM2 672 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 KIFC2Q96AC6 838 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 COA7Q96BR5 231 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 TRIM47Q96LD4 638 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 MPHOSPH6Q99547 160 aaKnown RBP9□□□□□ -0.97
LIMCH1-222ENST00000515847 BACH2Q9BYV9 841 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 MCOLN1Q9GZU1 580 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 BTBD7Q9P203 1132 aa9□□□□□ -0.97
LIMCH1-222ENST00000515847 NID2Q14112 1375 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 DOCK3Q8IZD9 2030 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 KLF18A0A0U1RQI7 1052 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 TNPO2O14787 897 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 ATP2A1O14983 1001 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 PKN2Q16513 984 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 Q3C1V9 767 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 ADCK5Q3MIX3 580 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 APOA5Q6Q788 366 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 Q6ZUG5 572 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 KCTD1Q719H9 257 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 CHST3Q7LGC8 479 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 TRMT44Q8IYL2 757 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 TRIM22Q8IYM9 498 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 TNS4Q8IZW8 715 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms